CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21807
CDY36905
CDY54257
CDY59856
CDY68129
CDY70164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34670.1	CDY21807	AT3G48100.1	18642946
AT4G34670.1	CDY36905	AT3G48100.1	18642946
AT4G34670.1	CDY54257	AT3G48100.1	18642946
AT4G34670.1	CDY59856	AT3G48100.1	18642946
AT4G34670.1	CDY68129	AT3G48100.1	18642946
AT4G34670.1	CDY70164	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017669.1-P	Field mustard	cytosol	100.0	100.0
CDY45324	Canola	cytosol, extracellular	100.0	100.0
CDX75453	Canola	cytosol	96.93	96.56
CDX69078	Canola	cytosol, extracellular	96.55	96.18
CDY41904	Canola	cytosol	94.25	93.89
CDY50760	Canola	cytosol	94.25	93.89
CDY17474	Canola	cytosol	88.12	93.88
CDX76296	Canola	cytosol	93.87	93.87
AT4G34670.1	Thale cress	cytosol	93.1	92.75
CDY40680	Canola	cytosol	92.72	92.37
CDX74165	Canola	cytosol	92.72	92.37
PGSC0003DMT400019867	Potato	cytosol	85.44	85.77
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	85.44	85.44
PGSC0003DMT400069575	Potato	cytosol	85.44	85.44
KRG91350	Soybean	nucleus	85.44	85.44
Solyc09g082520.2.1	Tomato	cytosol, nucleus	85.06	85.38
VIT_14s0030g01810.t01	Wine grape	cytosol	85.06	85.06
KRH27653	Soybean	endoplasmic reticulum	85.06	85.06
KRH35477	Soybean	nucleus	85.06	85.06
VIT_05s0020g03900.t01	Wine grape	cytosol	84.67	84.67
PGSC0003DMT400083968	Potato	cytosol	84.67	84.67
KRH77835	Soybean	nucleus	84.67	84.67
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	84.29	84.29
GSMUA_Achr3P30060_001	Banana	cytosol	83.14	83.14
Zm00001d048159_P001	Maize	cytosol	82.76	83.08
Zm00001d048157_P001	Maize	cytosol	82.76	83.08
KXG39941	Sorghum	cytosol	82.76	83.08
Zm00001d028117_P002	Maize	cytosol	82.38	82.69
EER99659	Sorghum	cytosol	83.14	82.51
GSMUA_Achr1P22500_001	Banana	cytosol	82.38	82.38
EER99658	Sorghum	cytosol	82.76	82.13
OQU92889	Sorghum	cytosol	75.1	82.01
Os03t0200500-01	Rice	nucleus	81.99	81.68
GSMUA_Achr6P24760_001	Banana	cytosol	81.23	81.54
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	81.61	80.99
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	81.61	80.99
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	81.61	80.99
GSMUA_Achr5P08700_001	Banana	cytosol	80.84	80.84
CDY30019	Canola	plasma membrane	92.72	80.13
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	82.38	79.04
VIT_05s0094g00620.t01	Wine grape	cytosol	31.8	77.57
EER99660	Sorghum	cytosol	63.6	76.15
Zm00001d006766_P001	Maize	cytosol	37.55	75.97
HORVU4Hr1G070370.1	Barley	cytosol, plastid	81.99	74.05
KRH53243	Soybean	cytosol, endoplasmic reticulum	74.71	73.86
HORVU1Hr1G032060.4	Barley	cytosol	80.46	72.66
CDY52999	Canola	cytosol	23.75	68.89
OQU90205	Sorghum	mitochondrion	74.71	67.94
Zm00001d048158_P002	Maize	plastid	82.76	67.08
HORVU6Hr1G080910.1	Barley	cytosol	21.84	64.04
GSMUA_Achr8P31000_001	Banana	cytosol	15.33	63.49
GSMUA_Achr4P16480_001	Banana	cytosol	7.66	62.5
KRH37543	Soybean	cytosol	45.21	54.88
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	42.91	40.73

Protein Annotations

MapMan:17.1.3.1.4	GO:A0A078C6N9	UniProt:A0A078C6N9	EnsemblPlants:CDX72495	ProteinID:CDX72495	ProteinID:CDX72495.1
ProteinID:CDY45324.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
EnsemblPlantsGene:GSBRNA2T00100024001	HAMAP:MF_03122	PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF12
InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	UniParc:UPI0001E7A3D6	SEG:seg

Description

BnaC07g45170D40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A078C6N9]

Coordinates

chrLK031796:+:1566385..1567979

Molecular Weight (calculated)

29880.3 Da

IEP (calculated)

10.442

GRAVY (calculated)

-0.569

Length

261 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGRKGGKKKI VDPFSKKDWY DIKAPSIFKQ RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDHS YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP ESIGRDIEKA
201: TQNIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPDET VAEEPTEIIG A

Best Arabidopsis Sequence Match ( AT3G04840.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Arabidopsis Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.