Factsheet for PGSC0003DMT400083968

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34670.1	PGSC0003DMT400063187	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069575	Potato	cytosol	99.23	99.23
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	98.85	98.85
PGSC0003DMT400019867	Potato	cytosol	89.27	89.62
VIT_14s0030g01810.t01	Wine grape	cytosol	87.74	87.74
GSMUA_Achr3P30060_001	Banana	cytosol	85.82	85.82
Bra017669.1-P	Field mustard	cytosol	84.67	84.67
CDX72495	Canola	cytosol	84.67	84.67
GSMUA_Achr5P08700_001	Banana	cytosol	84.67	84.67
CDY45324	Canola	cytosol, extracellular	84.67	84.67
GSMUA_Achr1P22500_001	Banana	cytosol	84.29	84.29
Zm00001d028117_P002	Maize	cytosol	83.91	84.23
AT4G34670.1	Thale cress	cytosol	84.29	83.97
Os03t0200500-01	Rice	nucleus	84.29	83.97
Zm00001d048159_P001	Maize	cytosol	83.52	83.85
Zm00001d048157_P001	Maize	cytosol	83.52	83.85
KXG39941	Sorghum	cytosol	83.52	83.85
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	84.29	83.65
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	84.29	83.65
CDX75453	Canola	cytosol	83.91	83.59
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	83.91	83.27
OQU92889	Sorghum	cytosol	76.25	83.26
CDX69078	Canola	cytosol, extracellular	83.52	83.21
Bra001127.1-P	Field mustard	cytosol	83.52	83.21
Bra011551.1-P	Field mustard	cytosol	83.52	83.21
Bra040119.1-P	Field mustard	cytosol	83.14	83.14
EER99659	Sorghum	cytosol	83.52	82.89
CDY41904	Canola	cytosol	83.14	82.82
CDY50760	Canola	cytosol	83.14	82.82
CDX76296	Canola	cytosol	82.76	82.76
GSMUA_Achr6P24760_001	Banana	cytosol	82.38	82.69
EER99658	Sorghum	cytosol	83.14	82.51
Bra040409.1-P	Field mustard	cytosol	82.76	82.44
CDY40680	Canola	cytosol	82.76	82.44
AT3G04840.1	Thale cress	cytosol	82.76	82.44
CDX74165	Canola	cytosol	82.76	82.44
Bra034643.1-P	Field mustard	cytosol	82.38	82.38
CDY17474	Canola	cytosol	77.01	82.04
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	82.76	79.41
HORVU4Hr1G070370.1	Barley	cytosol, plastid	83.91	75.78
VIT_05s0094g00620.t01	Wine grape	cytosol	31.03	75.7
HORVU1Hr1G032060.4	Barley	cytosol	83.14	75.09
EER99660	Sorghum	cytosol	61.69	73.85
Zm00001d006766_P001	Maize	cytosol	36.4	73.64
GSMUA_Achr8P31000_001	Banana	cytosol	17.62	73.02
CDY30019	Canola	plasma membrane	83.14	71.85
OQU90205	Sorghum	mitochondrion	75.48	68.64
Zm00001d048158_P002	Maize	plastid	83.52	67.7
GSMUA_Achr4P16480_001	Banana	cytosol	7.66	62.5
HORVU6Hr1G080910.1	Barley	cytosol	19.92	58.43
Bra026324.1-P	Field mustard	cytosol	19.92	57.78
CDY52999	Canola	cytosol	19.92	57.78
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	43.68	41.45

Protein Annotations

MapMan:17.1.3.1.4	ProteinID:ABB55362	ProteinID:ABB55362.1	ProteinID:ABB72808	ProteinID:ABB72808.1	ProteinID:ABB72815
ProteinID:ABB72815.1	ProteinID:ABB87133	ProteinID:ABB87133.1	EMBL:DQ241862	EMBL:DQ252485	EMBL:DQ268849
EMBL:DQ268856	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
HAMAP:MF_03122	PFAM:PF01015	EnsemblPlantsGene:PGSC0003DMG400033684	PGSC:PGSC0003DMG400033684	EnsemblPlants:PGSC0003DMT400083968	ScanProsite:PS01191
PANTHER:PTHR11830	PANTHER:PTHR11830:SF12	UniProt:Q2XPV8	InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS
SMART:SM01397	UniParc:UPI00005E4788	SEG:seg	:	:	:

Description

Cyc07 [Source:PGSC_GENE;Acc:PGSC0003DMG400033684]

Coordinates

chr3:+:45369398..45371877

Molecular Weight (calculated)

29694.0 Da

IEP (calculated)

10.427

GRAVY (calculated)

-0.601

Length

261 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGKKGGKKKA ADPYAKKDWY DIKAPSVFEI KNVGKTLVTR TQGTKIASDG LKHRVFEVSL ADLQKDEDQA FRKIRLRAED VQGRNVLTNF
101: HGMDFTTDKL RSLVRKWQTL IEAHVDVKTT DSYTLRMFCI AFTKKRPNQQ KRTCYAQSSQ IRQIRRKMVE IMRNQASSCD LKELVAKFIP ESIGREIEKA
201: TSSIFPLQNV YIRKVKILKA PKFDLGKLME VHGDYSEDVG VKLDRPAEET VAEAEAEVPG A

Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA

Arabidopsis Description

RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.