Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001127.1-P | Field mustard | cytosol | 95.79 | 95.42 |
| Bra040409.1-P | Field mustard | cytosol | 95.02 | 94.66 |
| Bra017669.1-P | Field mustard | cytosol | 91.95 | 91.95 |
| Bra034643.1-P | Field mustard | cytosol | 91.57 | 91.57 |
| Bra011551.1-P | Field mustard | cytosol | 91.57 | 91.22 |
| AT3G04840.1 | Thale cress | cytosol | 90.8 | 90.46 |
| KRG91350 | Soybean | nucleus | 85.82 | 85.82 |
| CDY30019 | Canola | plasma membrane | 99.23 | 85.76 |
| KRH35477 | Soybean | nucleus | 85.44 | 85.44 |
| VIT_05s0020g03900.t01 | Wine grape | cytosol | 85.44 | 85.44 |
| KRH77835 | Soybean | nucleus | 84.29 | 84.29 |
| KRH27653 | Soybean | endoplasmic reticulum | 83.91 | 83.91 |
| PGSC0003DMT400069575 | Potato | cytosol | 83.91 | 83.91 |
| Solyc06g072490.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 83.91 | 83.91 |
| Solyc03g097900.2.1 | Tomato | cytosol, nucleus, unclear | 83.52 | 83.52 |
| GSMUA_Achr3P30060_001 | Banana | cytosol | 83.52 | 83.52 |
| VIT_14s0030g01810.t01 | Wine grape | cytosol | 83.52 | 83.52 |
| PGSC0003DMT400019867 | Potato | cytosol | 83.14 | 83.46 |
| PGSC0003DMT400083968 | Potato | cytosol | 83.14 | 83.14 |
| GSMUA_Achr6P24760_001 | Banana | cytosol | 82.38 | 82.69 |
| Solyc09g082520.2.1 | Tomato | cytosol, nucleus | 82.38 | 82.69 |
| Zm00001d048157_P001 | Maize | cytosol | 81.99 | 82.31 |
| Zm00001d048159_P001 | Maize | cytosol | 81.99 | 82.31 |
| EER99659 | Sorghum | cytosol | 82.76 | 82.13 |
| TraesCS4A01G044700.1 | Wheat | cytosol, golgi, unclear | 82.76 | 82.13 |
| GSMUA_Achr1P22500_001 | Banana | cytosol | 81.99 | 81.99 |
| Zm00001d028117_P002 | Maize | cytosol | 81.61 | 81.92 |
| KXG39941 | Sorghum | cytosol | 81.61 | 81.92 |
| TraesCS4D01G260400.1 | Wheat | cytosol, golgi, nucleus, unclear | 82.38 | 81.75 |
| TraesCS4B01G260600.1 | Wheat | cytosol, nucleus, unclear | 82.38 | 81.75 |
| EER99658 | Sorghum | cytosol | 82.38 | 81.75 |
| Os03t0200500-01 | Rice | nucleus | 81.99 | 81.68 |
| GSMUA_Achr5P08700_001 | Banana | cytosol | 81.23 | 81.23 |
| OQU92889 | Sorghum | cytosol | 73.56 | 80.33 |
| Os02t0287000-02 | Rice | cytosol, golgi, nucleus, plasma membrane | 81.99 | 78.68 |
| VIT_05s0094g00620.t01 | Wine grape | cytosol | 31.42 | 76.64 |
| EER99660 | Sorghum | cytosol | 63.22 | 75.69 |
| Zm00001d006766_P001 | Maize | cytosol | 36.78 | 74.42 |
| HORVU4Hr1G070370.1 | Barley | cytosol, plastid | 81.61 | 73.7 |
| KRH53243 | Soybean | cytosol, endoplasmic reticulum | 73.56 | 72.73 |
| HORVU1Hr1G032060.4 | Barley | cytosol | 80.08 | 72.32 |
| Bra026324.1-P | Field mustard | cytosol | 24.9 | 72.22 |
| OQU90205 | Sorghum | mitochondrion | 73.95 | 67.25 |
| Zm00001d048158_P002 | Maize | plastid | 81.99 | 66.46 |
| HORVU6Hr1G080910.1 | Barley | cytosol | 22.61 | 66.29 |
| GSMUA_Achr4P16480_001 | Banana | cytosol | 8.05 | 65.62 |
| GSMUA_Achr8P31000_001 | Banana | cytosol | 15.33 | 63.49 |
| KRH37543 | Soybean | cytosol | 44.06 | 53.49 |
| GSMUA_Achr4P16490_001 | Banana | cytosol, mitochondrion | 43.68 | 41.45 |
Protein Annotations
| MapMan:17.1.3.1.4 | EnsemblPlantsGene:Bra040119 | EnsemblPlants:Bra040119.1 | EnsemblPlants:Bra040119.1-P | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | UniProt:M4FG92 | HAMAP:MF_03122 | PFAM:PF01015 |
| ScanProsite:PS01191 | PANTHER:PTHR11830 | PANTHER:PTHR11830:SF12 | InterPro:Ribosomal_S1/3_euk | InterPro:Ribosomal_S3Ae | InterPro:Ribosomal_S3Ae_CS |
| SMART:SM01397 | UniParc:UPI0002544EA0 | SEG:seg | : | : | : |
Description
AT4G34670 (E=9e-126) | 40S ribosomal protein S3A (RPS3aB)
Coordinates
chrA01:-:28369437..28370845
Molecular Weight (calculated)
29806.2 Da
IEP (calculated)
10.477
GRAVY (calculated)
-0.569
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVGKNKRIS KGRKGGKKKI VDPFAKKDWY DIKAPSSFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLNKDEDQA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IESHVDVKTT DNYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRSKMRE IMIKEASSSD LKELVAKFIP ESIGKDIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE VVEEPTEIIG A
101: WGMDFTTDKL RSLVKKWQTL IESHVDVKTT DNYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRSKMRE IMIKEASSSD LKELVAKFIP ESIGKDIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE VVEEPTEIIG A
001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA
Arabidopsis Description
RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.