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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • vacuole 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, unclear
Any Predictor:cytosol, mitochondrion, nucleus, vacuole
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G34670.1 Solyc03g113720.2.1 AT3G48100.1 18642946
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400083968 Potato cytosol 98.85 98.85
Solyc06g072490.2.1 Tomato cytosol, nucleus, plastid, unclear 98.85 98.85
Solyc09g082520.2.1 Tomato cytosol, nucleus 88.51 88.85
VIT_14s0030g01810.t01 Wine grape cytosol 87.36 87.36
GSMUA_Achr3P30060_001 Banana cytosol 85.44 85.44
AT4G34670.1 Thale cress cytosol 84.67 84.35
GSMUA_Achr5P08700_001 Banana cytosol 84.29 84.29
Bra017669.1-P Field mustard cytosol 84.29 84.29
CDY45324 Canola cytosol, extracellular 84.29 84.29
CDX72495 Canola cytosol 84.29 84.29
TraesCS4B01G260600.1 Wheat cytosol, nucleus, unclear 84.67 84.03
TraesCS4D01G260400.1 Wheat cytosol, golgi, nucleus, unclear 84.67 84.03
CDX75453 Canola cytosol 84.29 83.97
GSMUA_Achr1P22500_001 Banana cytosol 83.91 83.91
TraesCS4A01G044700.1 Wheat cytosol, golgi, unclear 84.29 83.65
CDX69078 Canola cytosol, extracellular 83.91 83.59
Os03t0200500-01 Rice nucleus 83.91 83.59
Bra011551.1-P Field mustard cytosol 83.91 83.59
Bra001127.1-P Field mustard cytosol 83.91 83.59
Bra040119.1-P Field mustard cytosol 83.52 83.52
Zm00001d048159_P001 Maize cytosol 83.14 83.46
Zm00001d048157_P001 Maize cytosol 83.14 83.46
KXG39941 Sorghum cytosol 83.14 83.46
OQU92889 Sorghum cytosol 76.25 83.26
CDY41904 Canola cytosol 83.52 83.21
CDY50760 Canola cytosol 83.52 83.21
CDX76296 Canola cytosol 83.14 83.14
Zm00001d028117_P002 Maize cytosol 82.76 83.08
AT3G04840.1 Thale cress cytosol 83.14 82.82
Bra040409.1-P Field mustard cytosol 83.14 82.82
CDX74165 Canola cytosol 83.14 82.82
CDY40680 Canola cytosol 83.14 82.82
Bra034643.1-P Field mustard cytosol 82.76 82.76
EER99659 Sorghum cytosol 83.14 82.51
CDY17474 Canola cytosol 77.39 82.45
GSMUA_Achr6P24760_001 Banana cytosol 81.99 82.31
EER99658 Sorghum cytosol 82.76 82.13
Os02t0287000-02 Rice cytosol, golgi, nucleus, plasma membrane 82.38 79.04
VIT_05s0094g00620.t01 Wine grape cytosol 31.42 76.64
HORVU4Hr1G070370.1 Barley cytosol, plastid 83.91 75.78
HORVU1Hr1G032060.4 Barley cytosol 83.14 75.09
Zm00001d006766_P001 Maize cytosol 36.78 74.42
EER99660 Sorghum cytosol 62.07 74.31
GSMUA_Achr8P31000_001 Banana cytosol 17.62 73.02
CDY30019 Canola plasma membrane 83.52 72.19
OQU90205 Sorghum mitochondrion 75.86 68.99
Zm00001d048158_P002 Maize plastid 83.14 67.39
HORVU6Hr1G080910.1 Barley cytosol 20.31 59.55
CDY52999 Canola cytosol 19.54 56.67
Bra026324.1-P Field mustard cytosol 19.54 56.67
GSMUA_Achr4P16480_001 Banana cytosol 6.9 56.25
GSMUA_Achr4P16490_001 Banana cytosol, mitochondrion 43.68 41.45
Protein Annotations
MapMan:17.1.3.1.4GO:GO:0002181GO:GO:0003674GO:GO:0003735GO:GO:0005198GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0019538GO:GO:0022627
GO:GO:0030529UniProt:K4BJK7HAMAP:MF_03122PFAM:PF01015ScanProsite:PS01191PANTHER:PTHR11830
PANTHER:PTHR11830:SF14InterPro:Ribosomal_S1/3_eukInterPro:Ribosomal_S3AeInterPro:Ribosomal_S3Ae_CSSMART:SM01397EnsemblPlantsGene:Solyc03g097900.2
EnsemblPlants:Solyc03g097900.2.1UniParc:UPI0002768591SEG:seg:::
Description
40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:K4BJK7]
Coordinates
chr3:-:60282725..60285218
Molecular Weight (calculated)
29710.0 Da
IEP (calculated)
10.427
GRAVY (calculated)
-0.611
Length
261 amino acids
Sequence
(BLAST)
001: MAVGKNKRIS KGKKGGKKKA ADPYAKKDWY DIKAPSVFEI KNVGKTLVTR TQGTKIASEG LKHRVFEVSL ADLQKDEDQA FRKIRLRAED VQGRNVLTNF
101: HGMDFTTDKL RSLVRKWQTL IEAHVDVKTT DSYTLRMFCI AFTKKRPNQQ KRTCYAQSSQ IRQIRRKMVE IMRNQASSCD LKELVAKFIP ESIGREIEKA
201: TSSIFPLQNV YIRKVKILKA PKFDLGKLME VHGDYSEDVG VKLDRPADET VAEAEAEVPG S
Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)
001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA
Arabidopsis Description
RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.