CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21807
CDY36905
CDY54257
CDY59856
CDY68129
CDY70164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34670.1	CDY21807	AT3G48100.1	18642946
AT4G34670.1	CDY36905	AT3G48100.1	18642946
AT4G34670.1	CDY54257	AT3G48100.1	18642946
AT4G34670.1	CDY59856	AT3G48100.1	18642946
AT4G34670.1	CDY68129	AT3G48100.1	18642946
AT4G34670.1	CDY70164	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75453	Canola	cytosol	99.62	99.62
CDX72495	Canola	cytosol	96.18	96.55
CDY45324	Canola	cytosol, extracellular	96.18	96.55
CDX76296	Canola	cytosol	94.66	95.02
CDY41904	Canola	cytosol	94.66	94.66
CDY50760	Canola	cytosol	94.66	94.66
CDY17474	Canola	cytosol	88.17	94.29
AT4G34670.1	Thale cress	cytosol	93.13	93.13
CDX74165	Canola	cytosol	91.98	91.98
CDY40680	Canola	cytosol	91.98	91.98
KRG91350	Soybean	nucleus	86.26	86.59
KRH27653	Soybean	endoplasmic reticulum	85.88	86.21
KRH35477	Soybean	nucleus	85.88	86.21
KRH77835	Soybean	nucleus	85.5	85.82
PGSC0003DMT400019867	Potato	cytosol	85.11	85.77
Solyc09g082520.2.1	Tomato	cytosol, nucleus	84.73	85.38
VIT_05s0020g03900.t01	Wine grape	cytosol	84.35	84.67
PGSC0003DMT400069575	Potato	cytosol	83.97	84.29
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	83.97	84.29
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	83.59	83.91
VIT_14s0030g01810.t01	Wine grape	cytosol	83.59	83.91
PGSC0003DMT400083968	Potato	cytosol	83.21	83.52
GSMUA_Achr3P30060_001	Banana	cytosol	83.21	83.52
Zm00001d048157_P001	Maize	cytosol	82.44	83.08
KXG39941	Sorghum	cytosol	82.44	83.08
Zm00001d048159_P001	Maize	cytosol	82.44	83.08
EER99659	Sorghum	cytosol	83.21	82.89
Zm00001d028117_P002	Maize	cytosol	82.06	82.69
EER99658	Sorghum	cytosol	82.82	82.51
Os03t0200500-01	Rice	nucleus	82.06	82.06
OQU92889	Sorghum	cytosol	74.81	82.01
GSMUA_Achr1P22500_001	Banana	cytosol	81.68	81.99
GSMUA_Achr6P24760_001	Banana	cytosol	81.3	81.92
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	82.06	81.75
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	82.06	81.75
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	81.68	81.37
GSMUA_Achr5P08700_001	Banana	cytosol	80.15	80.46
CDY30019	Canola	plasma membrane	91.98	79.8
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	82.44	79.41
VIT_05s0094g00620.t01	Wine grape	cytosol	31.3	76.64
EER99660	Sorghum	cytosol	63.74	76.61
Zm00001d006766_P001	Maize	cytosol	37.4	75.97
KRH53243	Soybean	cytosol, endoplasmic reticulum	75.19	74.62
HORVU4Hr1G070370.1	Barley	cytosol, plastid	81.3	73.7
HORVU1Hr1G032060.4	Barley	cytosol	80.53	73.01
CDY52999	Canola	cytosol	23.66	68.89
OQU90205	Sorghum	mitochondrion	74.81	68.29
Zm00001d048158_P002	Maize	plastid	82.44	67.08
HORVU6Hr1G080910.1	Barley	cytosol	21.76	64.04
GSMUA_Achr8P31000_001	Banana	cytosol	15.27	63.49
GSMUA_Achr4P16480_001	Banana	cytosol	7.63	62.5
KRH37543	Soybean	cytosol	44.66	54.42
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	43.13	41.09

Protein Annotations

MapMan:17.1.3.1.4	GO:A0A078C209	EnsemblPlants:CDX69078	ProteinID:CDX69078	ProteinID:CDX69078.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	EnsemblPlantsGene:GSBRNA2T00130853001	HAMAP:MF_03122	PFAM:PF01015
ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF12	InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS
SMART:SM01397	UniParc:UPI0004EEE673	SEG:seg	:	:	:

Description

BnaC01g03750D

Coordinates

chrLK031789:+:2802659..2804209

Molecular Weight (calculated)

29865.2 Da

IEP (calculated)

10.442

GRAVY (calculated)

-0.569

Length

262 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGRKGGKKKI VDPFSKKDWY DIKAPSNFKQ RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDHS YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI GFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGRDIEKA
201: VQSIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE ATAEEPTEII GA

Best Arabidopsis Sequence Match ( AT3G04840.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Arabidopsis Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.