CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50760	Canola	cytosol	100.0	100.0
Bra040409.1-P	Field mustard	cytosol	99.62	99.62
CDY40680	Canola	cytosol	96.18	96.18
CDX74165	Canola	cytosol	95.8	95.8
CDX69078	Canola	cytosol, extracellular	94.66	94.66
CDX75453	Canola	cytosol	94.27	94.27
CDX72495	Canola	cytosol	93.89	94.25
CDY45324	Canola	cytosol, extracellular	93.89	94.25
CDY17474	Canola	cytosol	87.79	93.88
CDX76296	Canola	cytosol	93.51	93.87
AT3G04840.1	Thale cress	cytosol	92.37	92.37
KRG91350	Soybean	nucleus	86.64	86.97
KRH35477	Soybean	nucleus	86.26	86.59
KRH77835	Soybean	nucleus	85.88	86.21
KRH27653	Soybean	endoplasmic reticulum	85.5	85.82
VIT_05s0020g03900.t01	Wine grape	cytosol	84.73	85.06
VIT_14s0030g01810.t01	Wine grape	cytosol	84.35	84.67
GSMUA_Achr3P30060_001	Banana	cytosol	83.59	83.91
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	83.59	83.91
PGSC0003DMT400069575	Potato	cytosol	83.59	83.91
PGSC0003DMT400019867	Potato	cytosol	83.21	83.85
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	83.21	83.52
Zm00001d048159_P001	Maize	cytosol	82.82	83.46
Zm00001d048157_P001	Maize	cytosol	82.82	83.46
Solyc09g082520.2.1	Tomato	cytosol, nucleus	82.82	83.46
EER99659	Sorghum	cytosol	83.59	83.27
GSMUA_Achr1P22500_001	Banana	cytosol	82.82	83.14
PGSC0003DMT400083968	Potato	cytosol	82.82	83.14
CDY30019	Canola	plasma membrane	95.8	83.11
Zm00001d028117_P002	Maize	cytosol	82.44	83.08
KXG39941	Sorghum	cytosol	82.44	83.08
EER99658	Sorghum	cytosol	83.21	82.89
Os03t0200500-01	Rice	nucleus	82.44	82.44
GSMUA_Achr6P24760_001	Banana	cytosol	81.68	82.31
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	82.06	81.75
GSMUA_Achr5P08700_001	Banana	cytosol	81.3	81.61
OQU92889	Sorghum	cytosol	74.43	81.59
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	81.68	81.37
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	81.68	81.37
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	82.82	79.78
VIT_05s0094g00620.t01	Wine grape	cytosol	31.68	77.57
EER99660	Sorghum	cytosol	63.74	76.61
Zm00001d006766_P001	Maize	cytosol	37.4	75.97
KRH53243	Soybean	cytosol, endoplasmic reticulum	75.19	74.62
HORVU1Hr1G032060.4	Barley	cytosol	81.3	73.7
HORVU4Hr1G070370.1	Barley	cytosol, plastid	80.92	73.36
CDY52999	Canola	cytosol	25.19	73.33
OQU90205	Sorghum	mitochondrion	74.81	68.29
Zm00001d048158_P002	Maize	plastid	82.82	67.39
HORVU6Hr1G080910.1	Barley	cytosol	22.14	65.17
GSMUA_Achr8P31000_001	Banana	cytosol	15.65	65.08
GSMUA_Achr4P16480_001	Banana	cytosol	7.63	62.5
KRH37543	Soybean	cytosol	45.42	55.35
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	43.13	41.09

Protein Annotations

MapMan:17.1.3.1.4	GO:A0A078HX00	UniProt:A0A078HX00	EnsemblPlants:CDY41904	ProteinID:CDY41904	ProteinID:CDY41904.1
ProteinID:CDY50760.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
EnsemblPlantsGene:GSBRNA2T00073883001	HAMAP:MF_03122	PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF12
InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	UniParc:UPI0001BA8EB8	SEG:seg

Description

BnaC05g47000D40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A078HX00]

Coordinates

chrLK032510:+:75866..77708

Molecular Weight (calculated)

29836.1 Da

IEP (calculated)

10.389

GRAVY (calculated)

-0.583

Length

262 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGRKGGKKKI VDPFSKKDWY DIKAPSNFNN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDHA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IESHVDVKTT DNYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRSKMRE IMIKEASSCD LKELVAKFIP EAIGKDIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TAAEEPTEII GA

Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA

Arabidopsis Description

RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.