Factsheet for PGSC0003DMT400019867

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34670.1	PGSC0003DMT400063187	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082520.2.1	Tomato	cytosol, nucleus	99.23	99.23
PGSC0003DMT400083968	Potato	cytosol	89.62	89.27
PGSC0003DMT400069575	Potato	cytosol	89.62	89.27
KRH27653	Soybean	endoplasmic reticulum	88.46	88.12
KRH77835	Soybean	nucleus	88.46	88.12
KRG91350	Soybean	nucleus	88.08	87.74
KRH35477	Soybean	nucleus	88.08	87.74
GSMUA_Achr3P30060_001	Banana	cytosol	87.31	86.97
VIT_05s0020g03900.t01	Wine grape	cytosol	86.54	86.21
GSMUA_Achr6P24760_001	Banana	cytosol	86.15	86.15
CDX75453	Canola	cytosol	86.15	85.5
CDX72495	Canola	cytosol	85.77	85.44
CDX76296	Canola	cytosol	85.77	85.44
Bra017669.1-P	Field mustard	cytosol	85.77	85.44
CDY45324	Canola	cytosol, extracellular	85.77	85.44
GSMUA_Achr5P08700_001	Banana	cytosol	85.77	85.44
CDX69078	Canola	cytosol, extracellular	85.77	85.11
Bra011551.1-P	Field mustard	cytosol	85.77	85.11
Bra034643.1-P	Field mustard	cytosol	85.38	85.06
GSMUA_Achr1P22500_001	Banana	cytosol	85.0	84.67
CDY17474	Canola	cytosol	79.62	84.49
AT4G34670.1	Thale cress	cytosol	85.0	84.35
AT3G04840.1	Thale cress	cytosol	85.0	84.35
Os03t0200500-01	Rice	nucleus	84.23	83.59
EER99659	Sorghum	cytosol	84.23	83.27
CDY50760	Canola	cytosol	83.85	83.21
CDY41904	Canola	cytosol	83.85	83.21
Bra040119.1-P	Field mustard	cytosol	83.46	83.14
EER99658	Sorghum	cytosol	83.85	82.89
Bra040409.1-P	Field mustard	cytosol	83.46	82.82
Zm00001d048159_P001	Maize	cytosol	82.69	82.69
Zm00001d048157_P001	Maize	cytosol	82.69	82.69
KXG39941	Sorghum	cytosol	82.69	82.69
OQU92889	Sorghum	cytosol	75.77	82.43
Zm00001d028117_P002	Maize	cytosol	82.31	82.31
CDY40680	Canola	cytosol	82.69	82.06
CDX74165	Canola	cytosol	82.69	82.06
Bra001127.1-P	Field mustard	cytosol	82.69	82.06
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	82.69	81.75
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	82.69	81.75
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	82.31	81.37
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	83.08	79.41
GSMUA_Achr4P16480_001	Banana	cytosol	9.62	78.12
KRH53243	Soybean	cytosol, endoplasmic reticulum	77.31	76.14
Zm00001d006766_P001	Maize	cytosol	36.92	74.42
EER99660	Sorghum	cytosol	62.31	74.31
HORVU4Hr1G070370.1	Barley	cytosol, plastid	82.31	74.05
HORVU1Hr1G032060.4	Barley	cytosol	80.38	72.32
CDY30019	Canola	plasma membrane	83.46	71.85
GSMUA_Achr8P31000_001	Banana	cytosol	16.54	68.25
OQU90205	Sorghum	mitochondrion	75.0	67.94
Zm00001d048158_P002	Maize	plastid	82.69	66.77
HORVU6Hr1G080910.1	Barley	cytosol	20.38	59.55
Bra026324.1-P	Field mustard	cytosol	20.38	58.89
CDY52999	Canola	cytosol	20.38	58.89
KRH37543	Soybean	cytosol	45.0	54.42
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	44.23	41.82

Protein Annotations

EntrezGene:102577548	MapMan:17.1.3.1.4	ProteinID:ABB72801	ProteinID:ABB72801.1	EMBL:DQ268842	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	HAMAP:MF_03122	RefSeq:NP_001275164.1
PFAM:PF01015	EnsemblPlantsGene:PGSC0003DMG400007685	PGSC:PGSC0003DMG400007685	EnsemblPlants:PGSC0003DMT400019867	ScanProsite:PS01191	PANTHER:PTHR11830
PANTHER:PTHR11830:SF14	UniProt:Q2XPX2	InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397
UniParc:UPI00005EDD6D	SEG:seg	:	:	:	:

Description

40S ribosomal protein S3a [Source:PGSC_GENE;Acc:PGSC0003DMG400007685]

Coordinates

chr9:-:54195485..54198142

Molecular Weight (calculated)

29602.9 Da

IEP (calculated)

10.511

GRAVY (calculated)

-0.599

Length

260 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGKKGGKKKA ADPYAKKDWY DIKAPSVFGV RNVGKTLVTR TQGTKIASEG LKHRVFEVSL ADLQNDEDHS FRKIRLRAED VQGRNVLTNF
101: HGMDFTTDKL RSLVKKWQSL IEAHVDVKTT DSYTLRMFCI GFTKKRPNQQ KRTCYAQSSQ IRQIRRKMRE IMVNQAQSCD LKDLVLKFIP ESIGREIEKA
201: TSSIYPLQNV FIRKVKILKA PKFDLGRLME VHGDYSEDVG VKVDRPAEDV ATEPTEVVGA

Best Arabidopsis Sequence Match ( AT3G04840.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Arabidopsis Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.