Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018084.1-P | |
| Bra019524.1-P | |
| Bra033773.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34670.1 | Bra018084.1-P | AT3G48100.1 | 18642946 |
| AT4G34670.1 | Bra019524.1-P | AT3G48100.1 | 18642946 |
| AT4G34670.1 | Bra033773.1-P | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72495 | Canola | cytosol | 100.0 | 100.0 |
| CDY45324 | Canola | cytosol, extracellular | 100.0 | 100.0 |
| Bra011551.1-P | Field mustard | cytosol | 96.55 | 96.18 |
| Bra040409.1-P | Field mustard | cytosol | 93.87 | 93.51 |
| Bra034643.1-P | Field mustard | cytosol | 93.49 | 93.49 |
| AT4G34670.1 | Thale cress | cytosol | 93.1 | 92.75 |
| Bra001127.1-P | Field mustard | cytosol | 92.72 | 92.37 |
| Bra040119.1-P | Field mustard | cytosol | 91.95 | 91.95 |
| PGSC0003DMT400019867 | Potato | cytosol | 85.44 | 85.77 |
| KRG91350 | Soybean | nucleus | 85.44 | 85.44 |
| PGSC0003DMT400069575 | Potato | cytosol | 85.44 | 85.44 |
| Solyc06g072490.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 85.44 | 85.44 |
| Solyc09g082520.2.1 | Tomato | cytosol, nucleus | 85.06 | 85.38 |
| VIT_14s0030g01810.t01 | Wine grape | cytosol | 85.06 | 85.06 |
| KRH35477 | Soybean | nucleus | 85.06 | 85.06 |
| KRH27653 | Soybean | endoplasmic reticulum | 85.06 | 85.06 |
| PGSC0003DMT400083968 | Potato | cytosol | 84.67 | 84.67 |
| VIT_05s0020g03900.t01 | Wine grape | cytosol | 84.67 | 84.67 |
| KRH77835 | Soybean | nucleus | 84.67 | 84.67 |
| Solyc03g097900.2.1 | Tomato | cytosol, nucleus, unclear | 84.29 | 84.29 |
| GSMUA_Achr3P30060_001 | Banana | cytosol | 83.14 | 83.14 |
| Zm00001d048159_P001 | Maize | cytosol | 82.76 | 83.08 |
| KXG39941 | Sorghum | cytosol | 82.76 | 83.08 |
| Zm00001d048157_P001 | Maize | cytosol | 82.76 | 83.08 |
| Zm00001d028117_P002 | Maize | cytosol | 82.38 | 82.69 |
| EER99659 | Sorghum | cytosol | 83.14 | 82.51 |
| GSMUA_Achr1P22500_001 | Banana | cytosol | 82.38 | 82.38 |
| EER99658 | Sorghum | cytosol | 82.76 | 82.13 |
| OQU92889 | Sorghum | cytosol | 75.1 | 82.01 |
| Os03t0200500-01 | Rice | nucleus | 81.99 | 81.68 |
| GSMUA_Achr6P24760_001 | Banana | cytosol | 81.23 | 81.54 |
| TraesCS4D01G260400.1 | Wheat | cytosol, golgi, nucleus, unclear | 81.61 | 80.99 |
| TraesCS4B01G260600.1 | Wheat | cytosol, nucleus, unclear | 81.61 | 80.99 |
| TraesCS4A01G044700.1 | Wheat | cytosol, golgi, unclear | 81.61 | 80.99 |
| GSMUA_Achr5P08700_001 | Banana | cytosol | 80.84 | 80.84 |
| Os02t0287000-02 | Rice | cytosol, golgi, nucleus, plasma membrane | 82.38 | 79.04 |
| VIT_05s0094g00620.t01 | Wine grape | cytosol | 31.8 | 77.57 |
| EER99660 | Sorghum | cytosol | 63.6 | 76.15 |
| Zm00001d006766_P001 | Maize | cytosol | 37.55 | 75.97 |
| HORVU4Hr1G070370.1 | Barley | cytosol, plastid | 81.99 | 74.05 |
| KRH53243 | Soybean | cytosol, endoplasmic reticulum | 74.71 | 73.86 |
| HORVU1Hr1G032060.4 | Barley | cytosol | 80.46 | 72.66 |
| Bra026324.1-P | Field mustard | cytosol | 23.75 | 68.89 |
| OQU90205 | Sorghum | mitochondrion | 74.71 | 67.94 |
| Zm00001d048158_P002 | Maize | plastid | 82.76 | 67.08 |
| HORVU6Hr1G080910.1 | Barley | cytosol | 21.84 | 64.04 |
| GSMUA_Achr8P31000_001 | Banana | cytosol | 15.33 | 63.49 |
| GSMUA_Achr4P16480_001 | Banana | cytosol | 7.66 | 62.5 |
| KRH37543 | Soybean | cytosol | 45.21 | 54.88 |
| GSMUA_Achr4P16490_001 | Banana | cytosol, mitochondrion | 42.91 | 40.73 |
Protein Annotations
| MapMan:17.1.3.1.4 | EnsemblPlantsGene:Bra017669 | EnsemblPlants:Bra017669.1 | EnsemblPlants:Bra017669.1-P | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | UniProt:M4DMD6 | HAMAP:MF_03122 | PFAM:PF01015 |
| ScanProsite:PS01191 | PANTHER:PTHR11830 | PANTHER:PTHR11830:SF12 | InterPro:Ribosomal_S1/3_euk | InterPro:Ribosomal_S3Ae | InterPro:Ribosomal_S3Ae_CS |
| SMART:SM01397 | UniParc:UPI0001E7A3D6 | SEG:seg | : | : | : |
Description
AT4G34670 (E=4e-127) | 40S ribosomal protein S3A (RPS3aB)
Coordinates
chrA03:+:29644107..29645392
Molecular Weight (calculated)
29880.3 Da
IEP (calculated)
10.442
GRAVY (calculated)
-0.569
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVGKNKRIS KGRKGGKKKI VDPFSKKDWY DIKAPSIFKQ RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDHS YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP ESIGRDIEKA
201: TQNIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPDET VAEEPTEIIG A
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP ESIGRDIEKA
201: TQNIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPDET VAEEPTEIIG A
001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA
Arabidopsis Description
RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.