Subcellular Localization
min:
: max
Winner_takes_all: golgi, unclear, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
unclear: 25769308 |
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G260600.1 | Wheat | cytosol, nucleus, unclear | 99.62 | 99.62 |
| TraesCS4D01G260400.1 | Wheat | cytosol, golgi, nucleus, unclear | 99.24 | 99.24 |
| HORVU4Hr1G070370.1 | Barley | cytosol, plastid | 98.48 | 89.62 |
| GSMUA_Achr3P30060_001 | Banana | cytosol | 85.17 | 85.82 |
| Os02t0287000-02 | Rice | cytosol, golgi, nucleus, plasma membrane | 88.59 | 85.66 |
| GSMUA_Achr1P22500_001 | Banana | cytosol | 84.41 | 85.06 |
| GSMUA_Achr5P08700_001 | Banana | cytosol | 84.41 | 85.06 |
| KRG91350 | Soybean | nucleus | 84.41 | 85.06 |
| PGSC0003DMT400069575 | Potato | cytosol | 84.03 | 84.67 |
| KRH77835 | Soybean | nucleus | 84.03 | 84.67 |
| KRH35477 | Soybean | nucleus | 83.65 | 84.29 |
| KRH27653 | Soybean | endoplasmic reticulum | 83.65 | 84.29 |
| Solyc03g097900.2.1 | Tomato | cytosol, nucleus, unclear | 83.65 | 84.29 |
| Solyc06g072490.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 83.65 | 84.29 |
| GSMUA_Achr6P24760_001 | Banana | cytosol | 83.27 | 84.23 |
| AT4G34670.1 | Thale cress | cytosol | 83.65 | 83.97 |
| PGSC0003DMT400083968 | Potato | cytosol | 83.27 | 83.91 |
| VIT_05s0020g03900.t01 | Wine grape | cytosol | 83.27 | 83.91 |
| VIT_14s0030g01810.t01 | Wine grape | cytosol | 82.51 | 83.14 |
| CDX76296 | Canola | cytosol | 82.51 | 83.14 |
| Bra034643.1-P | Field mustard | cytosol | 82.13 | 82.76 |
| Bra040119.1-P | Field mustard | cytosol | 82.13 | 82.76 |
| CDY17474 | Canola | cytosol | 76.81 | 82.45 |
| Bra001127.1-P | Field mustard | cytosol | 82.13 | 82.44 |
| PGSC0003DMT400019867 | Potato | cytosol | 81.37 | 82.31 |
| CDY41904 | Canola | cytosol | 81.75 | 82.06 |
| CDY40680 | Canola | cytosol | 81.75 | 82.06 |
| CDY50760 | Canola | cytosol | 81.75 | 82.06 |
| CDX74165 | Canola | cytosol | 81.75 | 82.06 |
| Solyc09g082520.2.1 | Tomato | cytosol, nucleus | 80.99 | 81.92 |
| AT3G04840.1 | Thale cress | cytosol | 81.37 | 81.68 |
| Bra040409.1-P | Field mustard | cytosol | 81.37 | 81.68 |
| CDX69078 | Canola | cytosol, extracellular | 81.37 | 81.68 |
| CDX75453 | Canola | cytosol | 81.37 | 81.68 |
| CDX72495 | Canola | cytosol | 80.99 | 81.61 |
| CDY45324 | Canola | cytosol, extracellular | 80.99 | 81.61 |
| Bra017669.1-P | Field mustard | cytosol | 80.99 | 81.61 |
| Bra011551.1-P | Field mustard | cytosol | 80.99 | 81.3 |
| VIT_05s0094g00620.t01 | Wine grape | cytosol | 30.42 | 74.77 |
| KRH53243 | Soybean | cytosol, endoplasmic reticulum | 74.52 | 74.24 |
| HORVU6Hr1G080910.1 | Barley | cytosol | 24.71 | 73.03 |
| CDY30019 | Canola | plasma membrane | 82.51 | 71.85 |
| GSMUA_Achr8P31000_001 | Banana | cytosol | 17.11 | 71.43 |
| GSMUA_Achr4P16480_001 | Banana | cytosol | 7.98 | 65.62 |
| KRH37543 | Soybean | cytosol | 46.01 | 56.28 |
| Bra026324.1-P | Field mustard | cytosol | 18.63 | 54.44 |
| CDY52999 | Canola | cytosol | 18.63 | 54.44 |
| GSMUA_Achr4P16490_001 | Banana | cytosol, mitochondrion | 42.97 | 41.09 |
Protein Annotations
| MapMan:17.1.3.1.4 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | HAMAP:MF_03122 | PFAM:PF01015 | ScanProsite:PS01191 |
| PANTHER:PTHR11830 | PANTHER:PTHR11830:SF13 | InterPro:Ribosomal_S1/3_euk | InterPro:Ribosomal_S3Ae | InterPro:Ribosomal_S3Ae_CS | SMART:SM01397 |
| EnsemblPlantsGene:TraesCS4A01G044700 | EnsemblPlants:TraesCS4A01G044700.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4A:+:37044345..37046529
Molecular Weight (calculated)
29962.5 Da
IEP (calculated)
10.458
GRAVY (calculated)
-0.499
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVGKNKRIS KGRKGSKKKA VDPFTKKQWY DIKAPLLFTS RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDQA YRKIRLRAED VQGMNVLTNF
101: WGMDFTTDKL RSLVRKWQTL IEAHVDVKTT DNYMLRMFAI GFTKRRPNQV KRTCYAQASQ IRQIRRKMVE IMVNQAASCD LKELVNKFIP EVIGKEIEKA
201: TSGIFPLQNV YVRKVKILKA PKFDLGKLME VHGDYKEDVG VKLDRPADGD EVIPGAEEVA AAE
101: WGMDFTTDKL RSLVRKWQTL IEAHVDVKTT DNYMLRMFAI GFTKRRPNQV KRTCYAQASQ IRQIRRKMVE IMVNQAASCD LKELVNKFIP EVIGKEIEKA
201: TSGIFPLQNV YVRKVKILKA PKFDLGKLME VHGDYKEDVG VKLDRPADGD EVIPGAEEVA AAE
001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA
Arabidopsis Description
RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.