Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76296 | Canola | cytosol | 98.78 | 92.72 |
| CDX69078 | Canola | cytosol, extracellular | 94.29 | 88.17 |
| CDX72495 | Canola | cytosol | 93.88 | 88.12 |
| CDY45324 | Canola | cytosol, extracellular | 93.88 | 88.12 |
| CDX75453 | Canola | cytosol | 93.88 | 87.79 |
| CDY41904 | Canola | cytosol | 93.88 | 87.79 |
| CDY50760 | Canola | cytosol | 93.88 | 87.79 |
| AT4G34670.1 | Thale cress | cytosol | 93.88 | 87.79 |
| CDX74165 | Canola | cytosol | 92.65 | 86.64 |
| CDY40680 | Canola | cytosol | 92.65 | 86.64 |
| KRH77835 | Soybean | nucleus | 86.12 | 80.84 |
| KRG91350 | Soybean | nucleus | 85.71 | 80.46 |
| KRH35477 | Soybean | nucleus | 85.31 | 80.08 |
| KRH27653 | Soybean | endoplasmic reticulum | 84.9 | 79.69 |
| PGSC0003DMT400019867 | Potato | cytosol | 84.49 | 79.62 |
| Solyc09g082520.2.1 | Tomato | cytosol, nucleus | 84.08 | 79.23 |
| EER99659 | Sorghum | cytosol | 83.67 | 77.95 |
| PGSC0003DMT400069575 | Potato | cytosol | 82.86 | 77.78 |
| VIT_14s0030g01810.t01 | Wine grape | cytosol | 82.86 | 77.78 |
| Solyc06g072490.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 82.86 | 77.78 |
| VIT_05s0094g00620.t01 | Wine grape | cytosol | 33.88 | 77.57 |
| EER99658 | Sorghum | cytosol | 83.27 | 77.57 |
| VIT_05s0020g03900.t01 | Wine grape | cytosol | 82.45 | 77.39 |
| Solyc03g097900.2.1 | Tomato | cytosol, nucleus, unclear | 82.45 | 77.39 |
| PGSC0003DMT400083968 | Potato | cytosol | 82.04 | 77.01 |
| GSMUA_Achr3P30060_001 | Banana | cytosol | 82.04 | 77.01 |
| Zm00001d048159_P001 | Maize | cytosol | 81.63 | 76.92 |
| KXG39941 | Sorghum | cytosol | 81.63 | 76.92 |
| Zm00001d048157_P001 | Maize | cytosol | 81.63 | 76.92 |
| TraesCS4B01G260600.1 | Wheat | cytosol, nucleus, unclear | 82.45 | 76.81 |
| TraesCS4A01G044700.1 | Wheat | cytosol, golgi, unclear | 82.45 | 76.81 |
| TraesCS4D01G260400.1 | Wheat | cytosol, golgi, nucleus, unclear | 82.45 | 76.81 |
| Zm00001d006766_P001 | Maize | cytosol | 40.41 | 76.74 |
| GSMUA_Achr6P24760_001 | Banana | cytosol | 81.22 | 76.54 |
| Zm00001d028117_P002 | Maize | cytosol | 81.22 | 76.54 |
| Os03t0200500-01 | Rice | nucleus | 81.63 | 76.34 |
| OQU92889 | Sorghum | cytosol | 73.88 | 75.73 |
| GSMUA_Achr1P22500_001 | Banana | cytosol | 80.41 | 75.48 |
| CDY30019 | Canola | plasma membrane | 92.65 | 75.17 |
| GSMUA_Achr5P08700_001 | Banana | cytosol | 80.0 | 75.1 |
| Os02t0287000-02 | Rice | cytosol, golgi, nucleus, plasma membrane | 82.04 | 73.9 |
| KRH53243 | Soybean | cytosol, endoplasmic reticulum | 75.92 | 70.45 |
| HORVU4Hr1G070370.1 | Barley | cytosol, plastid | 82.45 | 69.9 |
| EER99660 | Sorghum | cytosol | 61.63 | 69.27 |
| HORVU1Hr1G032060.4 | Barley | cytosol | 80.0 | 67.82 |
| HORVU6Hr1G080910.1 | Barley | cytosol | 24.08 | 66.29 |
| OQU90205 | Sorghum | mitochondrion | 74.29 | 63.41 |
| Zm00001d048158_P002 | Maize | plastid | 81.63 | 62.11 |
| CDY52999 | Canola | cytosol | 21.63 | 58.89 |
| GSMUA_Achr4P16480_001 | Banana | cytosol | 6.94 | 53.12 |
| KRH37543 | Soybean | cytosol | 41.63 | 47.44 |
| GSMUA_Achr8P31000_001 | Banana | cytosol | 11.43 | 44.44 |
| GSMUA_Achr4P16490_001 | Banana | cytosol, mitochondrion | 46.53 | 41.45 |
Protein Annotations
| MapMan:17.1.3.1.4 | GO:A0A078FWF3 | UniProt:A0A078FWF3 | EnsemblPlants:CDY17474 | ProteinID:CDY17474 | ProteinID:CDY17474.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00095651001 |
| HAMAP:MF_03122 | PFAM:PF01015 | ScanProsite:PS01191 | PANTHER:PTHR11830 | PANTHER:PTHR11830:SF12 | InterPro:Ribosomal_S1/3_euk |
| InterPro:Ribosomal_S3Ae | InterPro:Ribosomal_S3Ae_CS | SMART:SM01397 | UniParc:UPI0004EDCE29 | SEG:seg | : |
Description
BnaC03g65890D40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A078FWF3]
Coordinates
chrLK032074:+:75796..77480
Molecular Weight (calculated)
28040.7 Da
IEP (calculated)
10.270
GRAVY (calculated)
-0.660
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVGKNKRIS KGRKGGKKKI VDPFSKKDWY DIKAPSNFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQSDEDHA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRMFCI GFTKRRANQV KRTCYAQSSQ VRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGKEIEKA
201: TQNIYPLQNV FIRKVHGDYT AEDVGVKVDR PDDETAEEPT EIIGA
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRMFCI GFTKRRANQV KRTCYAQSSQ VRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGKEIEKA
201: TQNIYPLQNV FIRKVHGDYT AEDVGVKVDR PDDETAEEPT EIIGA
001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA
Arabidopsis Description
RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.