Factsheet for HORVU1Hr1G032060.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	83.05	88.24
GSMUA_Achr3P30060_001	Banana	cytosol	77.51	85.82
GSMUA_Achr1P22500_001	Banana	cytosol	77.51	85.82
GSMUA_Achr5P08700_001	Banana	cytosol	76.47	84.67
KRG91350	Soybean	nucleus	75.43	83.52
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	75.43	83.52
GSMUA_Achr6P24760_001	Banana	cytosol	75.09	83.46
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	75.09	83.14
KRH35477	Soybean	nucleus	75.09	83.14
KRH27653	Soybean	endoplasmic reticulum	75.09	83.14
PGSC0003DMT400069575	Potato	cytosol	75.09	83.14
PGSC0003DMT400083968	Potato	cytosol	75.09	83.14
KRH77835	Soybean	nucleus	74.39	82.38
HORVU4Hr1G070370.1	Barley	cytosol, plastid	82.35	82.35
VIT_14s0030g01810.t01	Wine grape	cytosol	73.7	81.61
VIT_05s0020g03900.t01	Wine grape	cytosol	73.7	81.61
CDY41904	Canola	cytosol	73.7	81.3
CDY50760	Canola	cytosol	73.7	81.3
Bra040409.1-P	Field mustard	cytosol	73.36	80.92
CDX69078	Canola	cytosol, extracellular	73.01	80.53
CDX75453	Canola	cytosol	73.01	80.53
CDY45324	Canola	cytosol, extracellular	72.66	80.46
CDX72495	Canola	cytosol	72.66	80.46
Bra017669.1-P	Field mustard	cytosol	72.66	80.46
CDX76296	Canola	cytosol	72.66	80.46
PGSC0003DMT400019867	Potato	cytosol	72.32	80.38
Bra011551.1-P	Field mustard	cytosol	72.66	80.15
Bra001127.1-P	Field mustard	cytosol	72.66	80.15
Bra040119.1-P	Field mustard	cytosol	72.32	80.08
Bra034643.1-P	Field mustard	cytosol	72.32	80.08
Solyc09g082520.2.1	Tomato	cytosol, nucleus	71.97	80.0
CDY17474	Canola	cytosol	67.82	80.0
AT4G34670.1	Thale cress	cytosol	72.32	79.77
CDY40680	Canola	cytosol	72.32	79.77
CDX74165	Canola	cytosol	72.32	79.77
AT3G04840.1	Thale cress	cytosol	71.97	79.39
VIT_05s0094g00620.t01	Wine grape	cytosol	27.34	73.83
GSMUA_Achr8P31000_001	Banana	cytosol	15.92	73.02
KRH53243	Soybean	cytosol, endoplasmic reticulum	65.74	71.97
CDY30019	Canola	plasma membrane	73.01	69.87
HORVU6Hr1G080910.1	Barley	cytosol	20.07	65.17
KRH37543	Soybean	cytosol	42.56	57.21
GSMUA_Achr4P16480_001	Banana	cytosol	5.88	53.12
CDY52999	Canola	cytosol	15.22	48.89
Bra026324.1-P	Field mustard	cytosol	15.22	48.89
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	40.83	42.91

Protein Annotations

MapMan:17.1.3.1.4	UniProt:A0A287F2X4	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627
EnsemblPlantsGene:HORVU1Hr1G032060	EnsemblPlants:HORVU1Hr1G032060.4	HAMAP:MF_03122	PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830
PANTHER:PTHR11830:SF13	InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	UniParc:UPI000B46E8A9
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A287F2X4]

Coordinates

chrchr1H:-:197717447..197720315

Molecular Weight (calculated)

32823.8 Da

IEP (calculated)

10.478

GRAVY (calculated)

-0.577

Length

289 amino acids

Sequence
(BLAST)

001: PNPSPHPTWS PRRHPPLPLP LPDEVAAMAV GKNKRISKGR KGSKKKTVDP FTKKDWYDIK APTLFNTRNI GKTLVSRTQG TKIASEGLKH RVFEVSLADL
101: QGDEDQAFRK IRLRAEDVQG KNVLTNFWGM DFTTDKLRSL VRKWQTLIEA HVDVKTTDNY MLRLFCIGFT KRRPNQVKRT CYAQASQIRQ IRRKMVEIMA
201: NQASTCDLKE LVSKFIPEVI GKEIEKATSS IFPLQNVYVR KVKILKAPKF DIGKLMEVHG DYNKEDVGVK LERPAEADEA GVEVAAPAE

Best Arabidopsis Sequence Match ( AT3G04840.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Arabidopsis Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.