Factsheet for VIT_01s0137g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13030.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P17930_001	Banana	cytosol	6.9	50.0
KRH31353	Soybean	nucleus	41.26	42.23
CDX98018	Canola	nucleus	39.11	41.87
Bra019804.1-P	Field mustard	nucleus	38.8	41.48
AT1G13030.1	Thale cress	nucleus	37.42	40.13
Os12t0288801-00	Rice	plastid	6.13	39.6
KRG97521	Soybean	nucleus	32.36	38.79
CDY26609	Canola	nucleus	35.58	38.73
CDY16053	Canola	nucleus	35.43	38.44
Bra026939.1-P	Field mustard	nucleus	35.12	38.42
GSMUA_Achr9P01970_001	Banana	nucleus	35.43	36.9
PGSC0003DMT400064747	Potato	nucleus	28.07	36.02
Solyc02g067090.2.1	Tomato	nucleus	27.76	35.63
CDY19377	Canola	nucleus	15.95	33.55
Solyc05g013740.2.1	Tomato	nucleus	41.56	33.01
Zm00001d003872_P002	Maize	nucleus	19.02	31.16
Zm00001d025294_P002	Maize	plasma membrane	14.42	30.82
Zm00001d025291_P001	Maize	plastid	11.2	29.08
EES12060	Sorghum	nucleus	31.14	29.0
Os12t0288600-01	Rice	nucleus	24.23	28.16
TraesCS1A01G328700.1	Wheat	nucleus	31.14	28.04
TraesCS1D01G331000.1	Wheat	nucleus	30.83	27.88
TraesCS1B01G342400.2	Wheat	nucleus	31.14	27.69
Zm00001d003875_P001	Maize	nucleus, plastid	6.9	23.68
GSMUA_Achr9P07590_001	Banana	nucleus	13.8	22.9
GSMUA_Achr9P17940_001	Banana	nucleus	7.36	17.45

Protein Annotations

EntrezGene:100256103	MapMan:35.1	ProteinID:CBI16805	ProteinID:CBI16805.3	InterPro:Coilin	InterPro:Coilin_N
UniProt:D7SMC6	EMBL:FN594954	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030619
GO:GO:0030620	PFAM:PF15862	PANTHER:PTHR15197	TIGR:TC59774	UniParc:UPI0001BE10AA	ArrayExpress:VIT_01s0137g00610
EnsemblPlantsGene:VIT_01s0137g00610	EnsemblPlants:VIT_01s0137g00610.t01	RefSeq:XP_010650633.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:7102394..7113624

Molecular Weight (calculated)

72666.2 Da

IEP (calculated)

5.924

GRAVY (calculated)

-0.854

Length

652 amino acids

Sequence
(BLAST)

001: MAMETVRVRV VLEDPDLLNK TQNSEGLRRS WLLLKPQHKT ISDLSSYLLR IFNLHDFCPN GLLLSMDGFV LPSFESTCIL KDKEIISVKR KGGAVIDLLE
101: VGDETNCSED EAIVENQHIH RGVKLLANEE FDKETGGYES ESEEDEPDQP EETVQVETAS AGNAGSKKRK ASRKLKSPKR KKNKYTRLEK CPVVLEDVEN
201: GVCEEQTKSC DDCTALPKKG SLKKHKSSNV NGKPDKARTL NIDERSNDVD ESSPNAKRCG ELQENGSQGV EVANPPDGTQ KYPSRSARRK KAKRKWLREL
301: AKVEKKEMHQ RQSPEKEVQK NSLEHQQPDQ NSDTDDAVIV PIVIRPGHIR FEPLGKDQTI QQNPVSVETF QWNGTTSKKK GQKWGKEKMS CRRNDYKDFN
401: QQHSETFAVE EGTPPKDPMD FDKLPSLTSS PKEGDMIAYR LIELSSTWTP ELSTFRVGKI SSYDPESNKL ILISVPESPI VAETRIDEDA SALEPDPDTS
501: LYREDGSLEI DFSSLIDVRI IKSGNSHLEK AVTARVEAPV DTQDAVSGVK PNNKNSGMST SLPGGELNIT QVSVAGVEHN INREMTAPPP ENGKVNAWDE
601: IDKVLSAKKA QLSQEDGSSK KESPGRSPWS YKALRGSALG PTMSFLRAQN NF

Best Arabidopsis Sequence Match ( AT1G13030.1 )
(BLAST)

001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI

Arabidopsis Description

COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.