Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019804.1-P | Field mustard | nucleus | 90.8 | 90.66 |
| CDY19377 | Canola | nucleus | 43.02 | 84.52 |
| CDY26609 | Canola | nucleus | 68.8 | 69.95 |
| CDY16053 | Canola | nucleus | 68.47 | 69.38 |
| AT1G13030.1 | Thale cress | nucleus | 66.67 | 66.78 |
| GSMUA_Achr9P17930_001 | Banana | cytosol | 7.06 | 47.78 |
| Os12t0288801-00 | Rice | plastid | 6.73 | 40.59 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 41.87 | 39.11 |
| KRH31353 | Soybean | nucleus | 38.42 | 36.73 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 34.98 | 34.03 |
| KRG97521 | Soybean | nucleus | 29.39 | 32.9 |
| Zm00001d025294_P002 | Maize | plasma membrane | 15.27 | 30.49 |
| Zm00001d003872_P002 | Maize | nucleus | 19.87 | 30.4 |
| Solyc02g067090.2.1 | Tomato | nucleus | 24.79 | 29.72 |
| Solyc05g013740.2.1 | Tomato | nucleus | 39.9 | 29.6 |
| PGSC0003DMT400064747 | Potato | nucleus | 24.47 | 29.33 |
| Os12t0288600-01 | Rice | nucleus | 25.29 | 27.45 |
| TraesCS1A01G328700.1 | Wheat | nucleus | 32.18 | 27.07 |
| EES12060 | Sorghum | nucleus | 31.03 | 27.0 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 31.53 | 26.63 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 31.69 | 26.33 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 8.21 | 26.32 |
| Zm00001d025291_P001 | Maize | plastid | 10.67 | 25.9 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 13.14 | 20.36 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 5.75 | 12.73 |
Protein Annotations
| EnsemblPlants:CDX98018 | EnsemblPlantsGene:GSBRNA2T00105382001 | InterPro:Coilin | InterPro:Coilin_N | PANTHER:PTHR15197 | PFAM:PF15862 |
| ProteinID:CDX98018 | ProteinID:CDX98018.1 | SEG:seg | UniParc:UPI0004EE7663 | MapMan:35.1 | : |
Description
BnaA06g07690D
Coordinates
chrLK031902:+:558394..561547
Molecular Weight (calculated)
68158.6 Da
IEP (calculated)
6.657
GRAVY (calculated)
-1.005
Length
609 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPEKVRVRL SFEDQRVLSK SQKKQGLKRS WVVLDPKCHR TVSEFSDHLL HTFCLFEACP HGISLSMDGF VLPPFESSCV LKDKDTVCVR RKKEPLLELV
101: EEDSEENVCA EIEAEERAPG AMLLANEEFQ KETGGYESES EEDELEEIVP EKKTSKKRKA SSKSTSSKRK KSKLATTEES PVEKENEAVV SKSNAVKKSK
201: TSDARRTEND EHNDVKAKSK TNSKKSSKQA ESKETNEQCN MSGETKKTPS RSARRKKAKR QWLREKTKQE KEEYLQLKQK QMVVAPNQKP AFTTNHQVTK
301: ENRSEALETQ KPDENGDGVG DEVVPVEVRP GHIRFEPLDK TDQASAEEIA PPAENFVWNG NMTKKKGQKW GREKAGLSKR YAQDMDEDTY QTEPAEAETV
401: AKGQIDFEQL VAYSGSVKKG DVIAYRLIEL TSSWTPEVSS FRVGKISNYD PESKKVTLMP VEEYPIEKKT EEDTDDSSMQ PDTSLYKEDG SLEIEFSSLL
501: DVRCIKTSSS SDTAEAAKSA PLKPVQTATN LKPSTDNGLQ TPVKENGKVD PWEELSNALS AKKAQLAQAN NGGWNKKGSS SGGSAWSYKA LRGSGMGPVM
601: KYLRSQKEI
101: EEDSEENVCA EIEAEERAPG AMLLANEEFQ KETGGYESES EEDELEEIVP EKKTSKKRKA SSKSTSSKRK KSKLATTEES PVEKENEAVV SKSNAVKKSK
201: TSDARRTEND EHNDVKAKSK TNSKKSSKQA ESKETNEQCN MSGETKKTPS RSARRKKAKR QWLREKTKQE KEEYLQLKQK QMVVAPNQKP AFTTNHQVTK
301: ENRSEALETQ KPDENGDGVG DEVVPVEVRP GHIRFEPLDK TDQASAEEIA PPAENFVWNG NMTKKKGQKW GREKAGLSKR YAQDMDEDTY QTEPAEAETV
401: AKGQIDFEQL VAYSGSVKKG DVIAYRLIEL TSSWTPEVSS FRVGKISNYD PESKKVTLMP VEEYPIEKKT EEDTDDSSMQ PDTSLYKEDG SLEIEFSSLL
501: DVRCIKTSSS SDTAEAAKSA PLKPVQTATN LKPSTDNGLQ TPVKENGKVD PWEELSNALS AKKAQLAQAN NGGWNKKGSS SGGSAWSYKA LRGSGMGPVM
601: KYLRSQKEI
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.