Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G328700.1 | Wheat | nucleus | 93.45 | 94.61 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 92.5 | 94.04 |
| Os12t0288801-00 | Rice | plastid | 8.87 | 64.36 |
| Zm00001d003872_P002 | Maize | nucleus | 31.38 | 57.79 |
| GSMUA_Achr9P17930_001 | Banana | cytosol | 7.09 | 57.78 |
| Zm00001d025291_P001 | Maize | plastid | 19.65 | 57.37 |
| Os12t0288600-01 | Rice | nucleus | 43.11 | 56.33 |
| EES12060 | Sorghum | nucleus | 53.21 | 55.71 |
| Zm00001d025294_P002 | Maize | plasma membrane | 21.96 | 52.79 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 12.82 | 49.47 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 29.6 | 34.66 |
| AT1G13030.1 | Thale cress | nucleus | 26.47 | 31.91 |
| CDX98018 | Canola | nucleus | 26.33 | 31.69 |
| Bra019804.1-P | Field mustard | nucleus | 26.19 | 31.48 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 27.69 | 31.14 |
| KRH31353 | Soybean | nucleus | 26.74 | 30.77 |
| Bra026939.1-P | Field mustard | nucleus | 24.56 | 30.2 |
| CDY16053 | Canola | nucleus | 24.69 | 30.12 |
| CDY26609 | Canola | nucleus | 24.42 | 29.88 |
| KRG97521 | Soybean | nucleus | 21.42 | 28.86 |
| CDY19377 | Canola | nucleus | 11.73 | 27.74 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 13.37 | 24.94 |
| Solyc02g067090.2.1 | Tomato | nucleus | 16.51 | 23.82 |
| PGSC0003DMT400064747 | Potato | nucleus | 16.23 | 23.43 |
| Solyc05g013740.2.1 | Tomato | nucleus | 25.51 | 22.78 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 6.41 | 17.09 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G342400.2 | EnsemblPlantsGene:TraesCS1B01G342400 | InterPro:Coilin | InterPro:Coilin_N | ncoils:Coil | PANTHER:PTHR15197 |
| PFAM:PF15862 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr1B:+:570515317..570523807
Molecular Weight (calculated)
80629.5 Da
IEP (calculated)
6.736
GRAVY (calculated)
-0.835
Length
733 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPPAPSPS PVRLRLVFDK ARLLRRAQRD LRRCWLLLRP ELATVADLAA HVAARFRLHR SCPGGVVLTM DGFAVPPFES TCIFRDKDII RVQQKACKRM
101: VHHDDVHCIE DPEKVEMRPL PTEDKILAIE YQIDSSKHQE EEVHCDHQPE EKVTSDHDLE NGHTSSKRKR KDEDAKIPES SRRKKLKKAK HIGCSKVDDI
201: CQDQGSHGSK ESKPSTIGIE EKKADIQTEC TVELDGKQKP DRCNKTELSC ETEVAGQTTQ IPKTSRSARR KKIKRQLRKL EKEKLKENVD CQESPAAADC
301: PSSSNHDDLP CPSSNENGPH LPFSSHEAEE EESDASEDIV PVVVRPGHIR FEPAELFVFL GEPNTSSAKE TQANFTWGGT MSKKKGQKWG MNNSNKKSAH
401: TCNLGKIVGS DTEVNHLVVD SRDEENVFSG ASNQKVNEIN HDVLAKEKSV AEEGKSASEP LDFEALYPLT RLPVEGDLIA YRLVTLSSLW CPEISSYRVG
501: KVLMYDLISS RIILLPVPEH PIITEEMTCE DESDAMMVDT SPYKEDGSLE IEYSNLLDVR LVKGSKPVSA DLSTPIRETG KEGKSPVGEP VALDENKGKV
601: HSQNGTSVPA LDENKGKVHS QNGTSVPPDS SKGPEAPPEN TRDKAWEASS EVPNGKPDDE AEGNNGWGAW KQNASTSAWS YRAQRSTALG PTLALLRGNN
701: GRGGGRGGGR GGGRGGGREG GRGGKPNNRK YGK
101: VHHDDVHCIE DPEKVEMRPL PTEDKILAIE YQIDSSKHQE EEVHCDHQPE EKVTSDHDLE NGHTSSKRKR KDEDAKIPES SRRKKLKKAK HIGCSKVDDI
201: CQDQGSHGSK ESKPSTIGIE EKKADIQTEC TVELDGKQKP DRCNKTELSC ETEVAGQTTQ IPKTSRSARR KKIKRQLRKL EKEKLKENVD CQESPAAADC
301: PSSSNHDDLP CPSSNENGPH LPFSSHEAEE EESDASEDIV PVVVRPGHIR FEPAELFVFL GEPNTSSAKE TQANFTWGGT MSKKKGQKWG MNNSNKKSAH
401: TCNLGKIVGS DTEVNHLVVD SRDEENVFSG ASNQKVNEIN HDVLAKEKSV AEEGKSASEP LDFEALYPLT RLPVEGDLIA YRLVTLSSLW CPEISSYRVG
501: KVLMYDLISS RIILLPVPEH PIITEEMTCE DESDAMMVDT SPYKEDGSLE IEYSNLLDVR LVKGSKPVSA DLSTPIRETG KEGKSPVGEP VALDENKGKV
601: HSQNGTSVPA LDENKGKVHS QNGTSVPPDS SKGPEAPPEN TRDKAWEASS EVPNGKPDDE AEGNNGWGAW KQNASTSAWS YRAQRSTALG PTLALLRGNN
701: GRGGGRGGGR GGGRGGGREG GRGGKPNNRK YGK
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.