Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98018 | Canola | nucleus | 84.52 | 43.02 |
| Bra019804.1-P | Field mustard | nucleus | 84.52 | 42.95 |
| CDY16053 | Canola | nucleus | 64.84 | 33.44 |
| CDY26609 | Canola | nucleus | 64.52 | 33.39 |
| AT1G13030.1 | Thale cress | nucleus | 62.26 | 31.74 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 33.55 | 15.95 |
| KRH31353 | Soybean | nucleus | 32.26 | 15.7 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 30.32 | 15.02 |
| KRG97521 | Soybean | nucleus | 24.52 | 13.97 |
| Solyc02g067090.2.1 | Tomato | nucleus | 22.58 | 13.78 |
| Os12t0288600-01 | Rice | nucleus | 24.84 | 13.73 |
| PGSC0003DMT400064747 | Potato | nucleus | 22.26 | 13.58 |
| Zm00001d025291_P001 | Maize | plastid | 10.0 | 12.35 |
| Solyc05g013740.2.1 | Tomato | nucleus | 32.58 | 12.3 |
| GSMUA_Achr9P17930_001 | Banana | cytosol | 3.55 | 12.22 |
| Os12t0288801-00 | Rice | plastid | 3.87 | 11.88 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 27.42 | 11.79 |
| TraesCS1A01G328700.1 | Wheat | nucleus | 27.42 | 11.74 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 27.74 | 11.73 |
| EES12060 | Sorghum | nucleus | 26.13 | 11.57 |
| Zm00001d003872_P002 | Maize | nucleus | 12.9 | 10.05 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 6.13 | 10.0 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 9.03 | 7.12 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 5.81 | 6.55 |
| Zm00001d025294_P002 | Maize | plasma membrane | 4.19 | 4.26 |
Protein Annotations
| EnsemblPlants:CDY19377 | EnsemblPlantsGene:GSBRNA2T00008915001 | InterPro:Coilin | PANTHER:PTHR15197 | ProteinID:CDY19377 | ProteinID:CDY19377.1 |
| SEG:seg | UniParc:UPI0004EE9F79 | UniProt:A0A078G2X7 | MapMan:35.1 | : | : |
Description
BnaC05g08860DBnaC05g08860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2X7]
Coordinates
chrLK032095:-:421947..423597
Molecular Weight (calculated)
35360.7 Da
IEP (calculated)
8.431
GRAVY (calculated)
-1.176
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGFVLPPFE SSCVLKIKTL CGYCVKRKKE PLLEIVEEDS EENIYELEEI VPEKKTSKKR KASKRLLLTY MRKKCKLATT EESPVERENE AVVSKGDAVK
101: KSKTSDAQRT ENDQQDEVKA KSMTKSKKSS QQDKSKEPNE QCNLSGETKK TPSRSARRKK AKRQWLREKT KQEKEEYLQL KQKQMVVAPT QKPAFTINHQ
201: VTKENRSEAL ETQQPDENGD GVGDEVVPVE VRPGHIRFEP LDETDQASAE EIAPPAEKFV WNGNMTKKKG QKWGTEKAGL SKRYAQDMDE DTYQTEPAEA
301: ETVAKGQIDF
101: KSKTSDAQRT ENDQQDEVKA KSMTKSKKSS QQDKSKEPNE QCNLSGETKK TPSRSARRKK AKRQWLREKT KQEKEEYLQL KQKQMVVAPT QKPAFTINHQ
201: VTKENRSEAL ETQQPDENGD GVGDEVVPVE VRPGHIRFEP LDETDQASAE EIAPPAEKFV WNGNMTKKKG QKWGTEKAGL SKRYAQDMDE DTYQTEPAEA
301: ETVAKGQIDF
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.