Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g113720.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13030.1 | Solyc03g113720.2.1 | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P17930_001 | Banana | cytosol | 4.99 | 45.56 |
| Os12t0288801-00 | Rice | plastid | 5.12 | 41.58 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 33.01 | 41.56 |
| Solyc02g067090.2.1 | Tomato | nucleus | 25.58 | 41.34 |
| CDX98018 | Canola | nucleus | 29.6 | 39.9 |
| Bra019804.1-P | Field mustard | nucleus | 28.99 | 39.02 |
| AT1G13030.1 | Thale cress | nucleus | 28.38 | 38.32 |
| CDY26609 | Canola | nucleus | 27.41 | 37.56 |
| Bra026939.1-P | Field mustard | nucleus | 27.16 | 37.42 |
| CDY16053 | Canola | nucleus | 27.28 | 37.27 |
| KRH31353 | Soybean | nucleus | 27.77 | 35.79 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 25.46 | 33.39 |
| CDY19377 | Canola | nucleus | 12.3 | 32.58 |
| KRG97521 | Soybean | nucleus | 20.95 | 31.62 |
| Zm00001d025294_P002 | Maize | plasma membrane | 10.96 | 29.51 |
| Zm00001d003872_P002 | Maize | nucleus | 13.64 | 28.14 |
| Zm00001d025291_P001 | Maize | plastid | 8.53 | 27.89 |
| EES12060 | Sorghum | nucleus | 23.51 | 27.57 |
| Os12t0288600-01 | Rice | nucleus | 18.03 | 26.38 |
| TraesCS1A01G328700.1 | Wheat | nucleus | 23.26 | 26.38 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 23.02 | 26.21 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 22.78 | 25.51 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 11.57 | 24.17 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 5.36 | 23.16 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 5.48 | 16.36 |
Protein Annotations
| EnsemblPlants:Solyc05g013740.2.1 | EnsemblPlantsGene:Solyc05g013740.2 | InterPro:Coilin | InterPro:Coilin_N | ncoils:Coil | PANTHER:PTHR15197 |
| PFAM:PF15862 | SEG:seg | UniParc:UPI000276609B | UniProt:K4BY95 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr5:+:7049704..7062964
Molecular Weight (calculated)
92282.5 Da
IEP (calculated)
7.820
GRAVY (calculated)
-1.148
Length
821 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGVRLRLSF NDPDILSDLQ KSEGFVKTWL LLKPQQHRTV SDLSSYLLHT FQLHDSCPNG ILLSMDGFVL PPFESTCILE DKDVVSVKKK RGHLAIDGNN
101: GPNVILAVER NNGPNAVEKL QIVEKQPLKG GPLLLANEAF DRGAGCYESC DSEETEDESE KEEEAEPEKD TSHQENALAG NAISKKRKAS EMLPSSKKKK
201: HCSDVKAKLD EQTKKQEDLT RKKRKVSDSN NKDMENNKGN AESNEDSHIT PSTKKTHALQ QNGVENIEAP PNSDATKKKG PSRSAKRKSA KRRWLREMAK
301: IKEKNADAES EGLRNWKEMQ AKAGKGEPSC QPKGRLNDGA NGHRNGKQQK TKTKKEEVTG QPKGLLHRKQ FHSEDKNGDT NEEKQAEEKS KSCGQSCQNS
401: DSEDEVVPVE IRPGHIRFEP VGKEQVSKQS EEEMESFKWN GMMSKKKGQK WGQEKVSFPQ KTDSLGSNKE YPDMMSRERQ KWIQEKDSFS QKNDSLSSNK
501: EHPEIMNRKR QKWGQENISF AQKNDSPGSS KEHPDMMNRE RQKWSQEKNL FYQKNDSLGS NKEHPEIMNR NRQNWGEENV SFSQKNDSLD SNKKHPEMLN
601: GEKDPHFNGS IDFNTLPFLS GQPKEGLVIA YRLLELSSTW TPEVSSYRVG KISSYNSEAN RVLLMPVAEF PVICTEDESS KQPDSSIYNE DGSLEIEFSA
701: LLEVRLMNST PDQGVHEGVI EGSAANESTP VLGSSKKKNE TPVPGAGEVS NGKQTRSTPS ENGGVNLWEQ FSDTLKSKKA ELAQESNWDK ASTGKSPWSY
801: RPMRGTALGP TMAFLRSQKK I
101: GPNVILAVER NNGPNAVEKL QIVEKQPLKG GPLLLANEAF DRGAGCYESC DSEETEDESE KEEEAEPEKD TSHQENALAG NAISKKRKAS EMLPSSKKKK
201: HCSDVKAKLD EQTKKQEDLT RKKRKVSDSN NKDMENNKGN AESNEDSHIT PSTKKTHALQ QNGVENIEAP PNSDATKKKG PSRSAKRKSA KRRWLREMAK
301: IKEKNADAES EGLRNWKEMQ AKAGKGEPSC QPKGRLNDGA NGHRNGKQQK TKTKKEEVTG QPKGLLHRKQ FHSEDKNGDT NEEKQAEEKS KSCGQSCQNS
401: DSEDEVVPVE IRPGHIRFEP VGKEQVSKQS EEEMESFKWN GMMSKKKGQK WGQEKVSFPQ KTDSLGSNKE YPDMMSRERQ KWIQEKDSFS QKNDSLSSNK
501: EHPEIMNRKR QKWGQENISF AQKNDSPGSS KEHPDMMNRE RQKWSQEKNL FYQKNDSLGS NKEHPEIMNR NRQNWGEENV SFSQKNDSLD SNKKHPEMLN
601: GEKDPHFNGS IDFNTLPFLS GQPKEGLVIA YRLLELSSTW TPEVSSYRVG KISSYNSEAN RVLLMPVAEF PVICTEDESS KQPDSSIYNE DGSLEIEFSA
701: LLEVRLMNST PDQGVHEGVI EGSAANESTP VLGSSKKKNE TPVPGAGEVS NGKQTRSTPS ENGGVNLWEQ FSDTLKSKKA ELAQESNWDK ASTGKSPWSY
801: RPMRGTALGP TMAFLRSQKK I
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.