Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d003875_P001 | Maize | nucleus, plastid | 59.76 | 78.95 |
| Os12t0288801-00 | Rice | plastid | 25.9 | 64.36 |
| GSMUA_Achr9P17930_001 | Banana | cytosol | 21.51 | 60.0 |
| TraesCS1A01G328700.1 | Wheat | nucleus | 57.77 | 20.03 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 56.97 | 19.83 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 57.37 | 19.65 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 25.1 | 16.03 |
| Solyc02g067090.2.1 | Tomato | nucleus | 28.69 | 14.17 |
| PGSC0003DMT400064747 | Potato | nucleus | 28.29 | 13.98 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 31.87 | 12.78 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 29.08 | 11.2 |
| CDY26609 | Canola | nucleus | 26.69 | 11.19 |
| Bra019804.1-P | Field mustard | nucleus | 26.69 | 10.98 |
| KRH31353 | Soybean | nucleus | 27.49 | 10.83 |
| CDY16053 | Canola | nucleus | 25.9 | 10.82 |
| Bra026939.1-P | Field mustard | nucleus | 25.5 | 10.74 |
| CDX98018 | Canola | nucleus | 25.9 | 10.67 |
| CDY19377 | Canola | nucleus | 12.35 | 10.0 |
| AT1G13030.1 | Thale cress | nucleus | 23.9 | 9.87 |
| Solyc05g013740.2.1 | Tomato | nucleus | 27.89 | 8.53 |
| Os12t0288600-01 | Rice | nucleus | 16.33 | 7.31 |
| KRG97521 | Soybean | nucleus | 11.55 | 5.33 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 5.58 | 5.09 |
| Zm00001d025294_P002 | Maize | plasma membrane | 1.2 | 0.98 |
| Zm00001d003872_P002 | Maize | nucleus | 1.2 | 0.75 |
Protein Annotations
| EnsemblPlants:Zm00001d025291_P001 | EnsemblPlants:Zm00001d025291_T001 | EnsemblPlantsGene:Zm00001d025291 | InterPro:Coilin | InterPro:Coilin_N | PANTHER:PTHR15197 |
| PFAM:PF15862 | ProteinID:AQK43461.1 | SEG:seg | UniParc:UPI000843456F | UniProt:A0A1D6J6B3 | MapMan:35.2 |
Description
Coilin
Coordinates
chr10:+:112919810..112922524
Molecular Weight (calculated)
28656.1 Da
IEP (calculated)
8.680
GRAVY (calculated)
-0.769
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MARPPPAAPA PVRLRLLFEN SRLLQRVQRD EGLRRCWLLL SPELDTVADL AAHVAARFRL RRTCPRGVVL SMDGFTLPPF ESTCIFRDND IIRVKQKSCR
101: KQVGHNDVHC IRDHDIIEKM PLPVDDKILA IQDQRDGRKH QEEEAHDDHQ LEENVTASHS IENNGTSSKR KWNDGVAEIP ESSKGKRPKV KNSGKHIDCS
201: KEEQRGSKKL KLSVIDIEDK KATLNHETTT TLVDQQKAEG YYLKAYASYC F
101: KQVGHNDVHC IRDHDIIEKM PLPVDDKILA IQDQRDGRKH QEEEAHDDHQ LEENVTASHS IENNGTSSKR KWNDGVAEIP ESSKGKRPKV KNSGKHIDCS
201: KEEQRGSKKL KLSVIDIEDK KATLNHETTT TLVDQQKAEG YYLKAYASYC F
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.