Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026939.1-P | Field mustard | nucleus | 69.74 | 71.14 |
| CDY26609 | Canola | nucleus | 69.57 | 70.62 |
| CDY16053 | Canola | nucleus | 68.91 | 69.72 |
| Bra019804.1-P | Field mustard | nucleus | 67.27 | 67.05 |
| CDX98018 | Canola | nucleus | 66.78 | 66.67 |
| CDY19377 | Canola | nucleus | 31.74 | 62.26 |
| GSMUA_Achr9P17930_001 | Banana | cytosol | 6.58 | 44.44 |
| Os12t0288801-00 | Rice | plastid | 6.25 | 37.62 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 40.13 | 37.42 |
| KRH31353 | Soybean | nucleus | 37.99 | 36.26 |
| KRG97521 | Soybean | nucleus | 29.11 | 32.54 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 33.06 | 32.11 |
| Zm00001d025294_P002 | Maize | plasma membrane | 15.3 | 30.49 |
| PGSC0003DMT400064747 | Potato | nucleus | 24.34 | 29.13 |
| Solyc02g067090.2.1 | Tomato | nucleus | 24.18 | 28.94 |
| Zm00001d003872_P002 | Maize | nucleus | 18.59 | 28.39 |
| Solyc05g013740.2.1 | Tomato | nucleus | 38.32 | 28.38 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 32.07 | 27.05 |
| TraesCS1A01G328700.1 | Wheat | nucleus | 32.07 | 26.93 |
| Os12t0288600-01 | Rice | nucleus | 24.84 | 26.92 |
| EES12060 | Sorghum | nucleus | 30.76 | 26.71 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 31.91 | 26.47 |
| Zm00001d025291_P001 | Maize | plastid | 9.87 | 23.9 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 6.91 | 22.11 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 13.82 | 21.37 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 7.4 | 16.36 |
Protein Annotations
| MapMan:35.1 | EntrezGene:837860 | UniProt:A0A178W997 | ProteinID:AAD31056.1 | ProteinID:AEE28961.1 | ArrayExpress:AT1G13030 |
| EnsemblPlantsGene:AT1G13030 | RefSeq:AT1G13030 | TAIR:AT1G13030 | RefSeq:AT1G13030-TAIR-G | EnsemblPlants:AT1G13030.1 | TAIR:AT1G13030.1 |
| EMBL:AY093028 | EMBL:AY128933 | Unigene:At.11249 | InterPro:Coilin | InterPro:Coilin_N | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0015030 | GO:GO:0030619 | GO:GO:0030620 | RefSeq:NP_172762.2 | ProteinID:OAP14756.1 |
| PFAM:PF15862 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR15197 | UniProt:Q8RWK8 | UniParc:UPI00000A3D81 |
| SEG:seg | : | : | : | : | : |
Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
Coordinates
chr1:-:4444043..4447412
Molecular Weight (calculated)
68670.4 Da
IEP (calculated)
5.497
GRAVY (calculated)
-0.919
Length
608 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.