Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26035336
|
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d003872_P002 | Maize | nucleus | 43.49 | 61.31 |
| Zm00001d025294_P002 | Maize | plasma membrane | 31.55 | 58.03 |
| EES12060 | Sorghum | nucleus | 56.86 | 45.57 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 55.44 | 43.13 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 56.33 | 43.11 |
| TraesCS1A01G328700.1 | Wheat | nucleus | 55.26 | 42.82 |
| KRG97521 | Soybean | nucleus | 27.09 | 27.94 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 29.95 | 26.84 |
| CDX98018 | Canola | nucleus | 27.45 | 25.29 |
| Bra019804.1-P | Field mustard | nucleus | 27.45 | 25.25 |
| CDY19377 | Canola | nucleus | 13.73 | 24.84 |
| AT1G13030.1 | Thale cress | nucleus | 26.92 | 24.84 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 28.16 | 24.23 |
| KRH31353 | Soybean | nucleus | 27.09 | 23.86 |
| Bra026939.1-P | Field mustard | nucleus | 25.31 | 23.83 |
| CDY16053 | Canola | nucleus | 25.31 | 23.63 |
| CDY26609 | Canola | nucleus | 24.96 | 23.37 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 6.6 | 19.47 |
| Solyc05g013740.2.1 | Tomato | nucleus | 26.38 | 18.03 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 8.2 | 16.73 |
| Solyc02g067090.2.1 | Tomato | nucleus | 14.79 | 16.34 |
| Zm00001d025291_P001 | Maize | plastid | 7.31 | 16.33 |
| PGSC0003DMT400064747 | Potato | nucleus | 14.08 | 15.55 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 8.56 | 12.21 |
| Os12t0288801-00 | Rice | plastid | 0.36 | 1.98 |
| GSMUA_Achr9P17930_001 | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os12t0288600-01 | EnsemblPlantsGene:Os12g0288600 | InterPro:Coilin | ncoils:Coil | PANTHER:PTHR15197 | ProteinID:ABA97134.2 |
| ProteinID:BAF29613.1 | ProteinID:BAT16765.1 | SEG:seg | UniParc:UPI0000D89D16 | UniProt:Q2QTN6 | MapMan:35.1 |
Description
Conserved hypothetical protein. (Os12t0288600-01)
Coordinates
chr12:-:11060788..11073485
Molecular Weight (calculated)
62322.0 Da
IEP (calculated)
7.094
GRAVY (calculated)
-1.059
Length
561 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAIEYKKDD DSNQQEGVQY NHQNVVNAAS HYNTRNDDIT LKRKCQDGER GSPGTSKKKK LKVANTGKHT GCSNEDKAHQ DQDHSGSKKL KSPCIDDAKK
101: VMLAEADVTL EKEQISKRDN QTKLNSETKE DDCNTQSDIK KVSRSARRKK LKRQLRQKAK EQLKEKEHCQ EQPTVADCPS SNNRDVLPSP SSNQNNSSLP
201: FVRHEADEEE SDTSDDIVPV VVRPGHIRFE SAGGESDKSP VKEIQTTFQW SGTTSKKKGQ KWGMDNSNKK SSDISYHGRI TGTDTEVNHH VAGNSKTSDN
301: DFGLASNQKV GESSHVGSAS EKIVAEKGKS SSEPLDFDSL YPLTRLPKEG DLIVYRLVEL SSSWCPELSS YRVGKVLIYD PISLRIILLP VPEYPFTAGE
401: KNGEDESEML VDMSPYKEDG SLEIEYSSLL DIRLLKDTDS VQPAVSTPLT ETGIKGGSHA QKPANLDNHK GKIHSEKLPN NTKDPEATQE KTQNTVWEEN
501: GEVANDEPAV QENGWGTWTP NASTSAWSYR ALRSSALGPT LAHLRGKNTK RGRPYNRKYG K
101: VMLAEADVTL EKEQISKRDN QTKLNSETKE DDCNTQSDIK KVSRSARRKK LKRQLRQKAK EQLKEKEHCQ EQPTVADCPS SNNRDVLPSP SSNQNNSSLP
201: FVRHEADEEE SDTSDDIVPV VVRPGHIRFE SAGGESDKSP VKEIQTTFQW SGTTSKKKGQ KWGMDNSNKK SSDISYHGRI TGTDTEVNHH VAGNSKTSDN
301: DFGLASNQKV GESSHVGSAS EKIVAEKGKS SSEPLDFDSL YPLTRLPKEG DLIVYRLVEL SSSWCPELSS YRVGKVLIYD PISLRIILLP VPEYPFTAGE
401: KNGEDESEML VDMSPYKEDG SLEIEYSSLL DIRLLKDTDS VQPAVSTPLT ETGIKGGSHA QKPANLDNHK GKIHSEKLPN NTKDPEATQE KTQNTVWEEN
501: GEVANDEPAV QENGWGTWTP NASTSAWSYR ALRSSALGPT LAHLRGKNTK RGRPYNRKYG K
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.