Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063187 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13030.1 | PGSC0003DMT400063187 | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g067090.2.1 | Tomato | nucleus | 89.76 | 89.76 |
| GSMUA_Achr9P17930_001 | Banana | cytosol | 8.46 | 47.78 |
| Os12t0288801-00 | Rice | plastid | 8.46 | 42.57 |
| Zm00001d025291_P001 | Maize | plastid | 13.98 | 28.29 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 36.02 | 28.07 |
| CDX98018 | Canola | nucleus | 29.33 | 24.47 |
| Bra019804.1-P | Field mustard | nucleus | 29.33 | 24.43 |
| AT1G13030.1 | Thale cress | nucleus | 29.13 | 24.34 |
| Bra026939.1-P | Field mustard | nucleus | 28.54 | 24.33 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 9.06 | 24.21 |
| CDY26609 | Canola | nucleus | 28.54 | 24.21 |
| CDY16053 | Canola | nucleus | 27.95 | 23.63 |
| KRH31353 | Soybean | nucleus | 28.35 | 22.61 |
| CDY19377 | Canola | nucleus | 13.58 | 22.26 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 27.17 | 22.04 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 16.34 | 21.12 |
| KRG97521 | Soybean | nucleus | 18.7 | 17.46 |
| TraesCS1A01G328700.1 | Wheat | nucleus | 24.02 | 16.85 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 23.62 | 16.64 |
| EES12060 | Sorghum | nucleus | 22.44 | 16.29 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 23.43 | 16.23 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 8.27 | 15.27 |
| Os12t0288600-01 | Rice | nucleus | 15.55 | 14.08 |
| Zm00001d025294_P002 | Maize | plasma membrane | 7.68 | 12.79 |
| Zm00001d003872_P002 | Maize | nucleus | 7.87 | 10.05 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400064747 | EnsemblPlantsGene:PGSC0003DMG400025149 | EntrezGene:102603469 | InterPro:Coilin | InterPro:Coilin_N | PANTHER:PTHR15197 |
| PFAM:PF15862 | PGSC:PGSC0003DMG400025149 | RefSeq:XP_006363414.1 | SEG:seg | UniParc:UPI0002962203 | UniProt:M1CCU5 |
| MapMan:35.1 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400025149]
Coordinates
chr2:+:25477991..25487584
Molecular Weight (calculated)
56565.7 Da
IEP (calculated)
9.756
GRAVY (calculated)
-0.935
Length
508 amino acids
Sequence
(BLAST)
(BLAST)
001: MERVRLRLTF EDPNILTDLQ KSEGLRCSWF LLKPQLLNKT ISDLSVHILR TFQLHSSCPH GLLLSMDGFL LPPFESTCIL KDKCIVSVKK KGGVLANEGN
101: DAPSIVENIR IVEKQPVNTG HLLLANKEFD NESGGYESED EEGADPTKVS SSHLENSLGC NIISEKRKAS QTLPGSKKKK HCSEVAEKVD EQTKKSQQGL
201: TSKKSHCKQK KVADPDSKDV DNIKGSAESS KVNESISGMK KSNEIQERGV ENVEATTKPE KVKKGPSRSA RKQYAKRQWL REMVKIYKNA ASEAEGLEVQ
301: ANGGRRAGKL HSKWHVNGET DGRPMGRRNW KQQQSKTEYQ EVVGQPKGLL HWKKLREEDK GRDTNKQEQV NEKSTLCGKP GQQSDMEAEI VPDQAMQHDQ
401: VQEIAFPSIH EVSLVKNGNS DSVGGLPATN KSNPVLNAVE KKTSGPAIEN GGVNLWEQHS ETNKAEQEQS HKESSWGTWS SVKKSSWSAR ALKGSARGPT
501: MAFRRYKR
101: DAPSIVENIR IVEKQPVNTG HLLLANKEFD NESGGYESED EEGADPTKVS SSHLENSLGC NIISEKRKAS QTLPGSKKKK HCSEVAEKVD EQTKKSQQGL
201: TSKKSHCKQK KVADPDSKDV DNIKGSAESS KVNESISGMK KSNEIQERGV ENVEATTKPE KVKKGPSRSA RKQYAKRQWL REMVKIYKNA ASEAEGLEVQ
301: ANGGRRAGKL HSKWHVNGET DGRPMGRRNW KQQQSKTEYQ EVVGQPKGLL HWKKLREEDK GRDTNKQEQV NEKSTLCGKP GQQSDMEAEI VPDQAMQHDQ
401: VQEIAFPSIH EVSLVKNGNS DSVGGLPATN KSNPVLNAVE KKTSGPAIEN GGVNLWEQHS ETNKAEQEQS HKESSWGTWS SVKKSSWSAR ALKGSARGPT
501: MAFRRYKR
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.