Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26609 | Canola | nucleus | 92.35 | 92.65 |
| AT1G13030.1 | Thale cress | nucleus | 69.72 | 68.91 |
| CDX98018 | Canola | nucleus | 69.38 | 68.47 |
| CDY19377 | Canola | nucleus | 33.44 | 64.84 |
| GSMUA_Achr9P17930_001 | Banana | cytosol | 6.82 | 45.56 |
| Os12t0288801-00 | Rice | plastid | 6.66 | 39.6 |
| KRH31353 | Soybean | nucleus | 38.44 | 36.26 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 38.44 | 35.43 |
| KRG97521 | Soybean | nucleus | 28.45 | 31.43 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 32.45 | 31.15 |
| Solyc02g067090.2.1 | Tomato | nucleus | 24.63 | 29.13 |
| PGSC0003DMT400064747 | Potato | nucleus | 23.63 | 27.95 |
| Zm00001d025294_P002 | Maize | plasma membrane | 14.14 | 27.87 |
| Solyc05g013740.2.1 | Tomato | nucleus | 37.27 | 27.28 |
| Zm00001d003872_P002 | Maize | nucleus | 17.97 | 27.14 |
| EES12060 | Sorghum | nucleus | 30.28 | 26.0 |
| Zm00001d025291_P001 | Maize | plastid | 10.82 | 25.9 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 8.15 | 25.79 |
| Os12t0288600-01 | Rice | nucleus | 23.63 | 25.31 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 30.12 | 25.1 |
| TraesCS1A01G328700.1 | Wheat | nucleus | 30.12 | 25.0 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 30.12 | 24.69 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 13.48 | 20.61 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 6.99 | 15.27 |
Protein Annotations
| EnsemblPlants:CDY16053 | EnsemblPlantsGene:GSBRNA2T00090451001 | InterPro:Coilin | InterPro:Coilin_N | ncoils:Coil | PANTHER:PTHR15197 |
| PFAM:PF15862 | ProteinID:CDY16053 | ProteinID:CDY16053.1 | SEG:seg | UniParc:UPI0004EE9ADC | UniProt:A0A078FUL5 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC08g40700DBnaC08g40700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUL5]
Coordinates
chrLK032060:-:343389..346923
Molecular Weight (calculated)
67821.4 Da
IEP (calculated)
5.704
GRAVY (calculated)
-0.926
Length
601 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEETVRIRL VFENQRILSK HQKKQGLKRS WAVLNPKYHR TVSEFSNHIL YTFSLFEACP HGLSLYMDGF VLPPFESSCV LKDKDIVCVK RKKESLLEIV
101: EEDSEENVCA AIEIEERRAR ICPVAVLIGN EETGGYESES EEEEEIVAEK KTSKKRKASS KSLSSKRKKC KLATTEETPL EREDAAVVNK SDDVKKKKRK
201: TIDVQRDEND EQNDANAKSM TMTKSKKSSL QEESNEPDEL CDMSAETKKT PSRSARRKKT KRQWLREKTK QEKEELQQNH MQMVVAPSQK PAITITIDHQ
301: ETEENHSEAL EKQQPDEQGD GVGDEVVPVE VRPGHIRFKP LDESDEASPE TEPPAENFLW NGNMTKKKGQ KWGTEKTGFS KRYAWDLNDT YHQTQPAEAE
401: TLANGQIDYE QLVAYTGSVK KGDIIAYRLI ELTSSWTPEV SSFRVGKISY YDPGSKKVML MPVQGYPIEK KLEEDDDSSM QADTSLYNED GSLEVEFSSL
501: LDVRSVKTSS SDVVEVATKP DQAATNVKLN TNINGLQTTV KENGKGNPWE ELSEAVSAKK AKLSEANNGW NKKGKSSSGG SWRRGGGIGP LMNYLRSQKE
601: I
101: EEDSEENVCA AIEIEERRAR ICPVAVLIGN EETGGYESES EEEEEIVAEK KTSKKRKASS KSLSSKRKKC KLATTEETPL EREDAAVVNK SDDVKKKKRK
201: TIDVQRDEND EQNDANAKSM TMTKSKKSSL QEESNEPDEL CDMSAETKKT PSRSARRKKT KRQWLREKTK QEKEELQQNH MQMVVAPSQK PAITITIDHQ
301: ETEENHSEAL EKQQPDEQGD GVGDEVVPVE VRPGHIRFKP LDESDEASPE TEPPAENFLW NGNMTKKKGQ KWGTEKTGFS KRYAWDLNDT YHQTQPAEAE
401: TLANGQIDYE QLVAYTGSVK KGDIIAYRLI ELTSSWTPEV SSFRVGKISY YDPGSKKVML MPVQGYPIEK KLEEDDDSSM QADTSLYNED GSLEVEFSSL
501: LDVRSVKTSS SDVVEVATKP DQAATNVKLN TNINGLQTTV KENGKGNPWE ELSEAVSAKK AKLSEANNGW NKKGKSSSGG SWRRGGGIGP LMNYLRSQKE
601: I
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.