Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P17930_001 | Banana | cytosol | 20.87 | 91.11 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 39.69 | 56.73 |
| Os12t0288801-00 | Rice | plastid | 12.72 | 49.51 |
| Zm00001d025291_P001 | Maize | plastid | 16.03 | 25.1 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 9.67 | 20.0 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 31.55 | 19.81 |
| Solyc02g067090.2.1 | Tomato | nucleus | 21.12 | 16.34 |
| PGSC0003DMT400064747 | Potato | nucleus | 21.12 | 16.34 |
| KRH31353 | Soybean | nucleus | 23.66 | 14.6 |
| EES12060 | Sorghum | nucleus | 25.7 | 14.43 |
| Bra026939.1-P | Field mustard | nucleus | 21.37 | 14.09 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 25.45 | 13.87 |
| AT1G13030.1 | Thale cress | nucleus | 21.37 | 13.82 |
| TraesCS1A01G328700.1 | Wheat | nucleus | 25.45 | 13.81 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 22.9 | 13.8 |
| CDY26609 | Canola | nucleus | 20.61 | 13.52 |
| CDY16053 | Canola | nucleus | 20.61 | 13.48 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 24.94 | 13.37 |
| Bra019804.1-P | Field mustard | nucleus | 20.61 | 13.28 |
| CDX98018 | Canola | nucleus | 20.36 | 13.14 |
| Solyc05g013740.2.1 | Tomato | nucleus | 24.17 | 11.57 |
| Zm00001d025294_P002 | Maize | plasma membrane | 8.4 | 10.82 |
| CDY19377 | Canola | nucleus | 7.12 | 9.03 |
| KRG97521 | Soybean | nucleus | 12.21 | 8.82 |
| Os12t0288600-01 | Rice | nucleus | 12.21 | 8.56 |
| Zm00001d003872_P002 | Maize | nucleus | 8.14 | 8.04 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P07590_001 | EnsemblPlants:GSMUA_Achr9T07590_001 | EnsemblPlantsGene:GSMUA_Achr9G07590_001 | InterPro:Coilin | InterPro:Coilin_N | PANTHER:PTHR15197 |
| PFAM:PF15862 | SEG:seg | UniParc:UPI0002969178 | UniProt:M0TYB8 | MapMan:35.1 | : |
Description
Conserved conserved hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G07590_001]
Coordinates
chr9:+:4853718..4858206
Molecular Weight (calculated)
44650.2 Da
IEP (calculated)
9.924
GRAVY (calculated)
-0.748
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEPMRVRVE FEDHRRLLTK SQRKDGLHRC WILLGPHLPT VADLAAHLAR SFALHRSCPR GICLYMDEFV LPPFESTSIF RDKDIIRVRK KACKQRQLLG
101: TCNSAYCMQD SENVVKHCIH IDNNLLVHPD LPVNSRTNKR NKGEGSCDFQ QNTTNIHAIL SEETNLKKKE HMNKTRMLKR RKLNPSNTEK PIITAEPNEN
201: VLFEKNEHFV QKRSSLRRIL NRKDGTSDGD GRCDSLISNR LHQAHANYCR SQPESHANGK AEQSEYPLLV DVGLLKAIST SDMQSDGNKM AAPANNWEVA
301: VSVASAKESS THVTEPMPNS DWGQMQQCLS ERMKTRLQEN RWDCWIANKI SATPWPWAVS GRGAVGTADG SFRGKWRNRA PAKYVTNLKS SKS
101: TCNSAYCMQD SENVVKHCIH IDNNLLVHPD LPVNSRTNKR NKGEGSCDFQ QNTTNIHAIL SEETNLKKKE HMNKTRMLKR RKLNPSNTEK PIITAEPNEN
201: VLFEKNEHFV QKRSSLRRIL NRKDGTSDGD GRCDSLISNR LHQAHANYCR SQPESHANGK AEQSEYPLLV DVGLLKAIST SDMQSDGNKM AAPANNWEVA
301: VSVASAKESS THVTEPMPNS DWGQMQQCLS ERMKTRLQEN RWDCWIANKI SATPWPWAVS GRGAVGTADG SFRGKWRNRA PAKYVTNLKS SKS
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.