Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026939.1-P | Field mustard | nucleus | 94.99 | 95.47 |
| CDY16053 | Canola | nucleus | 92.65 | 92.35 |
| AT1G13030.1 | Thale cress | nucleus | 70.62 | 69.57 |
| CDX98018 | Canola | nucleus | 69.95 | 68.8 |
| CDY19377 | Canola | nucleus | 33.39 | 64.52 |
| GSMUA_Achr9P17930_001 | Banana | cytosol | 6.84 | 45.56 |
| Os12t0288801-00 | Rice | plastid | 6.51 | 38.61 |
| KRH31353 | Soybean | nucleus | 38.23 | 35.95 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 38.73 | 35.58 |
| KRG97521 | Soybean | nucleus | 28.38 | 31.25 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 32.55 | 31.15 |
| Solyc02g067090.2.1 | Tomato | nucleus | 25.21 | 29.72 |
| PGSC0003DMT400064747 | Potato | nucleus | 24.21 | 28.54 |
| Zm00001d025294_P002 | Maize | plasma membrane | 14.19 | 27.87 |
| Solyc05g013740.2.1 | Tomato | nucleus | 37.56 | 27.41 |
| Zm00001d025291_P001 | Maize | plastid | 11.19 | 26.69 |
| Zm00001d003872_P002 | Maize | nucleus | 17.53 | 26.38 |
| EES12060 | Sorghum | nucleus | 30.22 | 25.86 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 8.01 | 25.26 |
| Os12t0288600-01 | Rice | nucleus | 23.37 | 24.96 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 29.88 | 24.83 |
| TraesCS1A01G328700.1 | Wheat | nucleus | 29.88 | 24.72 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 29.88 | 24.42 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 13.52 | 20.61 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 7.18 | 15.64 |
Protein Annotations
| EnsemblPlants:CDY26609 | EnsemblPlantsGene:GSBRNA2T00035482001 | InterPro:Coilin | InterPro:Coilin_N | PANTHER:PTHR15197 | PFAM:PF15862 |
| ProteinID:CDY26609 | ProteinID:CDY26609.1 | SEG:seg | UniParc:UPI0004EF232E | UniProt:A0A078GN13 | MapMan:35.1 |
Description
BnaA09g46680DBnaA09g46680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GN13]
Coordinates
chrLK032192:-:320703..323880
Molecular Weight (calculated)
67636.3 Da
IEP (calculated)
5.475
GRAVY (calculated)
-0.901
Length
599 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEETVRIRL VFENQRILSK HQKKQGLKRS WAVLNPKYHR TVSEFSNHIL YTFSLFEACP HGLSLYMDGF VLPPFESSCV LKDKDIVCVK RKKEPLLEIV
101: EEDSDENVCA AIDIEERAQV LPDAMLIGNE ETGGYESESE EEEEVVPEKK TSKKRKACSK SLSSKRKKCK LATTEETPLE REDAAVVNKS NDVKKKKRKT
201: LDVQRDENDE QNDANAKSMT MTKSKKSSLQ EESNEPDELS NISAETIKTP SRSARRKKAK RQWLREKTKQ EKEELQQNQM QMVVAPSKKP AITIDHQETE
301: ENHSEALEKQ QPDEQVDGVR DEVVVPVEVR PGHIRFKPLD ESDEAFPETE PPAESFLWNG NMTKKKGQKW GTEKTGFSKR YAWDLNDTYH QTQPAEAETL
401: ANGQIDYEQL VAYTGSVKKG DIIAYRLIEL TSSWTPEVSS FRVGKISYYD PVSKMVTLMP VQGYPIEKKI EEDDDSSMQA DTSLYNEDGS LEVEFSSLLD
501: VRSVKTSSSD VVEVATKPDQ AATNLKLSTN SNGLQTTVKE NGKGNPWEEL SEAVSAKKAK LSEANNGWNK KGKSSSGGSW RRGGGIGPLM NYLRSQKEI
101: EEDSDENVCA AIDIEERAQV LPDAMLIGNE ETGGYESESE EEEEVVPEKK TSKKRKACSK SLSSKRKKCK LATTEETPLE REDAAVVNKS NDVKKKKRKT
201: LDVQRDENDE QNDANAKSMT MTKSKKSSLQ EESNEPDELS NISAETIKTP SRSARRKKAK RQWLREKTKQ EKEELQQNQM QMVVAPSKKP AITIDHQETE
301: ENHSEALEKQ QPDEQVDGVR DEVVVPVEVR PGHIRFKPLD ESDEAFPETE PPAESFLWNG NMTKKKGQKW GTEKTGFSKR YAWDLNDTYH QTQPAEAETL
401: ANGQIDYEQL VAYTGSVKKG DIIAYRLIEL TSSWTPEVSS FRVGKISYYD PVSKMVTLMP VQGYPIEKKI EEDDDSSMQA DTSLYNEDGS LEVEFSSLLD
501: VRSVKTSSSD VVEVATKPDQ AATNLKLSTN SNGLQTTVKE NGKGNPWEEL SEAVSAKKAK LSEANNGWNK KGKSSSGGSW RRGGGIGPLM NYLRSQKEI
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.