Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018084.1-P | |
| Bra019524.1-P | |
| Bra033773.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13030.1 | Bra018084.1-P | AT3G48100.1 | 18642946 |
| AT1G13030.1 | Bra019524.1-P | AT3G48100.1 | 18642946 |
| AT1G13030.1 | Bra033773.1-P | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26609 | Canola | nucleus | 95.47 | 94.99 |
| AT1G13030.1 | Thale cress | nucleus | 71.14 | 69.74 |
| Bra019804.1-P | Field mustard | nucleus | 70.47 | 68.85 |
| GSMUA_Achr9P17930_001 | Banana | cytosol | 7.05 | 46.67 |
| Os12t0288801-00 | Rice | plastid | 6.54 | 38.61 |
| KRH31353 | Soybean | nucleus | 38.42 | 35.95 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 38.42 | 35.12 |
| KRG97521 | Soybean | nucleus | 28.36 | 31.07 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 32.38 | 30.83 |
| Solyc02g067090.2.1 | Tomato | nucleus | 25.17 | 29.53 |
| PGSC0003DMT400064747 | Potato | nucleus | 24.33 | 28.54 |
| Zm00001d025294_P002 | Maize | plasma membrane | 14.26 | 27.87 |
| Solyc05g013740.2.1 | Tomato | nucleus | 37.42 | 27.16 |
| Zm00001d003872_P002 | Maize | nucleus | 17.62 | 26.38 |
| EES12060 | Sorghum | nucleus | 30.7 | 26.14 |
| Zm00001d025291_P001 | Maize | plastid | 10.74 | 25.5 |
| Os12t0288600-01 | Rice | nucleus | 23.83 | 25.31 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 30.2 | 24.97 |
| TraesCS1A01G328700.1 | Wheat | nucleus | 30.2 | 24.86 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 7.89 | 24.74 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 30.2 | 24.56 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 14.09 | 21.37 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 7.38 | 16.0 |
Protein Annotations
Description
AT1G13030 (E=2e-175) | sphere organelles protein-related
Coordinates
chrA09:+:34405037..34407942
Molecular Weight (calculated)
67432.0 Da
IEP (calculated)
5.580
GRAVY (calculated)
-0.927
Length
596 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEETVRIRL VFENQRILSK HQKKQGLKRS WAVLNPKHHR TVSEFSNHIL YTFSLFEACP HGLSLYMDGF VLPPFESSCV LKDKDIVCVK RKKEPLLEIV
101: EEDSDENVCA AIEIEERARI CPDAVLIGNE ETGGYESEYE EEEEIVPEKK TSKKRKSSSK SLTSKRKKCK LATTEETPLE REDAAVVNKS NDVKKKKRKT
201: LDVQRDENDE ENDANATMTK SKKSSLQEES NEPDELCNMS AETKKTPSRS ARRKKAKRQW LREKTKQEKE ELQQNQMQMV VAPSKKPAIT IDHQETEENH
301: SEALEKQQPD EQVDGVRDEV VVPVEVRPGH IRFKPLDESD EAFPETEPPA ESFLWNGNMT KKKGQKWGTE KTGFSKRYAW DLNDTYHQTQ PAEAETLANG
401: QIDYEQLVAY TGSVKKGDII AYRLIELTSS WTPEVSSFRV GKISYYDPVS KMVTLMPVQG YPIEKKIEED DDSSMQADTS LYNEDGSLEV EFSSLLDVRS
501: VKTSSSDVVE VATKPDQAAT NLKLSTNSNG LQTTVKENGK GNPWEELSEA VSAKKAKLSE ANNGWNKKGK SSSGGSWRRG GGIGPLMNYL RSQKEI
101: EEDSDENVCA AIEIEERARI CPDAVLIGNE ETGGYESEYE EEEEIVPEKK TSKKRKSSSK SLTSKRKKCK LATTEETPLE REDAAVVNKS NDVKKKKRKT
201: LDVQRDENDE ENDANATMTK SKKSSLQEES NEPDELCNMS AETKKTPSRS ARRKKAKRQW LREKTKQEKE ELQQNQMQMV VAPSKKPAIT IDHQETEENH
301: SEALEKQQPD EQVDGVRDEV VVPVEVRPGH IRFKPLDESD EAFPETEPPA ESFLWNGNMT KKKGQKWGTE KTGFSKRYAW DLNDTYHQTQ PAEAETLANG
401: QIDYEQLVAY TGSVKKGDII AYRLIELTSS WTPEVSSFRV GKISYYDPVS KMVTLMPVQG YPIEKKIEED DDSSMQADTS LYNEDGSLEV EFSSLLDVRS
501: VKTSSSDVVE VATKPDQAAT NLKLSTNSNG LQTTVKENGK GNPWEELSEA VSAKKAKLSE ANNGWNKKGK SSSGGSWRRG GGIGPLMNYL RSQKEI
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.