Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13030.1 | KRH03376 | AT3G48100.1 | 18642946 |
| AT1G13030.1 | KRH54462 | AT3G48100.1 | 18642946 |
| AT1G13030.1 | KRH57009 | AT3G48100.1 | 18642946 |
| AT1G13030.1 | KRH63457 | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH31353 | Soybean | nucleus | 81.43 | 69.54 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 38.79 | 32.36 |
| Zm00001d003872_P002 | Maize | nucleus | 22.06 | 30.15 |
| Zm00001d025294_P002 | Maize | plasma membrane | 16.54 | 29.51 |
| CDX98018 | Canola | nucleus | 32.9 | 29.39 |
| AT1G13030.1 | Thale cress | nucleus | 32.54 | 29.11 |
| Bra019804.1-P | Field mustard | nucleus | 32.17 | 28.69 |
| CDY16053 | Canola | nucleus | 31.43 | 28.45 |
| CDY26609 | Canola | nucleus | 31.25 | 28.38 |
| Bra026939.1-P | Field mustard | nucleus | 31.07 | 28.36 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 32.35 | 28.11 |
| Os12t0288600-01 | Rice | nucleus | 27.94 | 27.09 |
| CDY19377 | Canola | nucleus | 13.97 | 24.52 |
| TraesCS1A01G328700.1 | Wheat | nucleus | 30.15 | 22.65 |
| EES12060 | Sorghum | nucleus | 28.68 | 22.29 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 29.41 | 22.19 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 28.86 | 21.42 |
| Solyc05g013740.2.1 | Tomato | nucleus | 31.62 | 20.95 |
| PGSC0003DMT400064747 | Potato | nucleus | 17.46 | 18.7 |
| Solyc02g067090.2.1 | Tomato | nucleus | 17.1 | 18.31 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 4.96 | 14.21 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 7.17 | 14.18 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 8.82 | 12.21 |
| Zm00001d025291_P001 | Maize | plastid | 5.33 | 11.55 |
| Os12t0288801-00 | Rice | plastid | 1.65 | 8.91 |
| GSMUA_Achr9P17930_001 | Banana | cytosol | 1.29 | 7.78 |
Protein Annotations
| EMBL:ACUP02010799 | EnsemblPlants:KRG97521 | EnsemblPlantsGene:GLYMA_18G013300 | InterPro:Coilin | PANTHER:PTHR15197 | ProteinID:KRG97521 |
| ProteinID:KRG97521.1 | SEG:seg | UniParc:UPI000294C0E2 | UniProt:K7MPD3 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr18:-:933127..939495
Molecular Weight (calculated)
61623.9 Da
IEP (calculated)
7.166
GRAVY (calculated)
-1.056
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MINLQCCGPR HVRIRLLSFR NFSKIEGLQE EESGAEETMS QKDDDDQLED AVYVESKSDG NVVFKKRKAS KKLKSPSQKK IKLSTAENLS VTPKVHEKEN
101: GSSEGHEEEN GSFDGYIHHQ LSLVKKDKKK SSNLSSQPNK SSNLNKQKND KSDPTSDETR FVQPQDESET KKLPSRSARR KKAKRRWLRE LKLEKEKEKL
201: HQTPVLEKGG QELPINDNNC VVSDVHQQPD EESEEEDDIA PVEIRPGHIR FEPLKKDQDQ AVPQNQFPVE TFQWNGITNK KKGQKWGKER MPFRKQDGYE
301: DSGQDCPTVQ NAEKEQTSNV IDFDKLKHYT SLPKEGDVIA YRLIELTASW TPELSSFRVG KISRYDAKSN RIWLEPVLEY PFDFKKKIDE DASSVQYDPS
401: PYQEDGSLEI EYTLLADVRM VKHGIPDLKS DALVNPTKAT NDITNEKLAA KAINGSTGEK LAGDQTTVGS CHPERGHITA KENGEVNVWD KINEALKAKK
501: AKLSQEDCWS RGGESSSTRS WSHRAMRCSA LGPTMALLRS NNGL
101: GSSEGHEEEN GSFDGYIHHQ LSLVKKDKKK SSNLSSQPNK SSNLNKQKND KSDPTSDETR FVQPQDESET KKLPSRSARR KKAKRRWLRE LKLEKEKEKL
201: HQTPVLEKGG QELPINDNNC VVSDVHQQPD EESEEEDDIA PVEIRPGHIR FEPLKKDQDQ AVPQNQFPVE TFQWNGITNK KKGQKWGKER MPFRKQDGYE
301: DSGQDCPTVQ NAEKEQTSNV IDFDKLKHYT SLPKEGDVIA YRLIELTASW TPELSSFRVG KISRYDAKSN RIWLEPVLEY PFDFKKKIDE DASSVQYDPS
401: PYQEDGSLEI EYTLLADVRM VKHGIPDLKS DALVNPTKAT NDITNEKLAA KAINGSTGEK LAGDQTTVGS CHPERGHITA KENGEVNVWD KINEALKAKK
501: AKLSQEDCWS RGGESSSTRS WSHRAMRCSA LGPTMALLRS NNGL
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.