Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d003872_P002 | Maize | nucleus | 77.05 | 59.05 |
| EES12060 | Sorghum | nucleus | 84.26 | 36.71 |
| Os12t0288600-01 | Rice | nucleus | 58.03 | 31.55 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 53.77 | 22.75 |
| TraesCS1A01G328700.1 | Wheat | nucleus | 53.11 | 22.38 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 52.79 | 21.96 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 35.08 | 17.09 |
| KRG97521 | Soybean | nucleus | 29.51 | 16.54 |
| Bra019804.1-P | Field mustard | nucleus | 30.82 | 15.41 |
| AT1G13030.1 | Thale cress | nucleus | 30.49 | 15.3 |
| CDX98018 | Canola | nucleus | 30.49 | 15.27 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 30.82 | 14.42 |
| Bra026939.1-P | Field mustard | nucleus | 27.87 | 14.26 |
| CDY26609 | Canola | nucleus | 27.87 | 14.19 |
| CDY16053 | Canola | nucleus | 27.87 | 14.14 |
| KRH31353 | Soybean | nucleus | 29.51 | 14.13 |
| Solyc05g013740.2.1 | Tomato | nucleus | 29.51 | 10.96 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 9.84 | 10.91 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 10.82 | 8.4 |
| PGSC0003DMT400064747 | Potato | nucleus | 12.79 | 7.68 |
| Solyc02g067090.2.1 | Tomato | nucleus | 12.79 | 7.68 |
| CDY19377 | Canola | nucleus | 4.26 | 4.19 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 1.31 | 2.11 |
| Zm00001d025291_P001 | Maize | plastid | 0.98 | 1.2 |
| Os12t0288801-00 | Rice | plastid | 0.0 | 0.0 |
| GSMUA_Achr9P17930_001 | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d025294_P002 | EnsemblPlants:Zm00001d025294_T002 | EnsemblPlantsGene:Zm00001d025294 | InterPro:Coilin | PANTHER:PTHR15197 | ProteinID:AQK43462.1 |
| UniParc:UPI0008429B92 | UniProt:A0A1D6J6B5 | MapMan:35.1 | : | : | : |
Description
Coilin
Coordinates
chr10:+:112973342..112984868
Molecular Weight (calculated)
33932.0 Da
IEP (calculated)
7.381
GRAVY (calculated)
-0.664
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKKKGQKWG MNSSNKKNAD IGYHAGIAGC STEVNNHVMD IKVTENGFCA VNNRRNNEGS NIEMSSVQNI ANEEKSSEPF NFESLYPLTR LPKRLPVFWT
101: LQEGDLIAYR LVELSSMLCP ELSSYRVGKV LVYDPVSLRI ILVPVQEYPI TTEEKENKDE SDMLVDLSPY KEDGSLEIEY SSLVDVRLLK GIETCNEVGS
201: APAGRPVTLH KNEGNIESQK SPLVSNNTKG EERALGKSES TVWEKNGEPS DKVDLLQNGW ATWKQNASTS AWSYRALRSS ALGPTMAILR GKNSQSKPPN
301: RKNSK
101: LQEGDLIAYR LVELSSMLCP ELSSYRVGKV LVYDPVSLRI ILVPVQEYPI TTEEKENKDE SDMLVDLSPY KEDGSLEIEY SSLVDVRLLK GIETCNEVGS
201: APAGRPVTLH KNEGNIESQK SPLVSNNTKG EERALGKSES TVWEKNGEPS DKVDLLQNGW ATWKQNASTS AWSYRALRSS ALGPTMAILR GKNSQSKPPN
301: RKNSK
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.