Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G328700.1 | Wheat | nucleus | 94.87 | 94.48 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 94.04 | 92.5 |
| Os12t0288801-00 | Rice | plastid | 8.88 | 63.37 |
| GSMUA_Achr9P17930_001 | Banana | cytosol | 7.35 | 58.89 |
| Zm00001d003872_P002 | Maize | nucleus | 32.18 | 58.29 |
| Zm00001d025291_P001 | Maize | plastid | 19.83 | 56.97 |
| Os12t0288600-01 | Rice | nucleus | 43.13 | 55.44 |
| EES12060 | Sorghum | nucleus | 53.4 | 55.0 |
| Zm00001d025294_P002 | Maize | plasma membrane | 22.75 | 53.77 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 12.76 | 48.42 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 29.96 | 34.5 |
| AT1G13030.1 | Thale cress | nucleus | 27.05 | 32.07 |
| CDX98018 | Canola | nucleus | 26.63 | 31.53 |
| Bra019804.1-P | Field mustard | nucleus | 26.35 | 31.15 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 27.88 | 30.83 |
| KRH31353 | Soybean | nucleus | 27.18 | 30.77 |
| Bra026939.1-P | Field mustard | nucleus | 24.97 | 30.2 |
| CDY16053 | Canola | nucleus | 25.1 | 30.12 |
| CDY26609 | Canola | nucleus | 24.83 | 29.88 |
| KRG97521 | Soybean | nucleus | 22.19 | 29.41 |
| CDY19377 | Canola | nucleus | 11.79 | 27.42 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 13.87 | 25.45 |
| Solyc02g067090.2.1 | Tomato | nucleus | 16.92 | 24.02 |
| PGSC0003DMT400064747 | Potato | nucleus | 16.64 | 23.62 |
| Solyc05g013740.2.1 | Tomato | nucleus | 26.21 | 23.02 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 6.24 | 16.36 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G331000.1 | EnsemblPlantsGene:TraesCS1D01G331000 | InterPro:Coilin | InterPro:Coilin_N | ncoils:Coil | PANTHER:PTHR15197 |
| PFAM:PF15862 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr1D:+:421215970..421224329
Molecular Weight (calculated)
79323.7 Da
IEP (calculated)
6.706
GRAVY (calculated)
-0.878
Length
721 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPPAPSPS PVRLRLVFDK TRLLRRAQRD LRRCWLLLRP ELATVADLSA HVAARFRLHR SCPGGVVLTM DGFALPPFES TCIFRDKDII RVQQKACKRM
101: VHHDDVHCIE DPEKVEMRPL QTDDKILAIE YQIDSSKHQE EDVHCDHQPE ENVTSNHNLE NGHTSSKRKR KDEDAKIPES SRRKKQKKVK HIGCSKVDDI
201: CQDQGSHGSK ESKPSTIGIE EKKADIQTEC TIELDGKQKP DRCNKTELSC ETEVAGQTTQ IPKTSRSARR KKIKRQLRKQ EKEKLKENVD CQESANAADC
301: PSSSNHNDLP CPSSNENGPH LSHEAEEEES DASEDIVPVV VRPGHIRFEP AGEPNTSSAK EAQANFTWGG TMSKKKGQKW GMNSSNKKSA DTGNLGKIVG
401: SNTEVNHLVV DSRDEENVFS GASNQKVDEI NHDLLAKEKS VAEEGKSTSE PLDFEALYPL TRLPVEGDLI AYRLVTLSSS WCPEISSYRV GKVLVYDLIS
501: LRIILLPVPE HPIITEEITC EDESDTMMVD TSPYKEDGSL EIEYSNLLDV RLVKGSEPVS ADLSTPIRET GKEGKSPVGE PVALDENKGK VHSQNGTSVP
601: ALDKNKGKVH SQNGTSVPDG SKGPEAPPCP EAPPENTRDK AWEASSEVPN GKPDDEAEGN NGWGAWKQNA STSAWSYRAQ RSTALGPTLA LLRGNNGRGG
701: GRGGGRGGGR GGKPNNRKYG K
101: VHHDDVHCIE DPEKVEMRPL QTDDKILAIE YQIDSSKHQE EDVHCDHQPE ENVTSNHNLE NGHTSSKRKR KDEDAKIPES SRRKKQKKVK HIGCSKVDDI
201: CQDQGSHGSK ESKPSTIGIE EKKADIQTEC TIELDGKQKP DRCNKTELSC ETEVAGQTTQ IPKTSRSARR KKIKRQLRKQ EKEKLKENVD CQESANAADC
301: PSSSNHNDLP CPSSNENGPH LSHEAEEEES DASEDIVPVV VRPGHIRFEP AGEPNTSSAK EAQANFTWGG TMSKKKGQKW GMNSSNKKSA DTGNLGKIVG
401: SNTEVNHLVV DSRDEENVFS GASNQKVDEI NHDLLAKEKS VAEEGKSTSE PLDFEALYPL TRLPVEGDLI AYRLVTLSSS WCPEISSYRV GKVLVYDLIS
501: LRIILLPVPE HPIITEEITC EDESDTMMVD TSPYKEDGSL EIEYSNLLDV RLVKGSEPVS ADLSTPIRET GKEGKSPVGE PVALDENKGK VHSQNGTSVP
601: ALDKNKGKVH SQNGTSVPDG SKGPEAPPCP EAPPENTRDK AWEASSEVPN GKPDDEAEGN NGWGAWKQNA STSAWSYRAQ RSTALGPTLA LLRGNNGRGG
701: GRGGGRGGGR GGKPNNRKYG K
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.