Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr9P17930_001 | Banana | cytosol | 9.11 | 63.33 |
Os12t0288801-00 | Rice | plastid | 8.31 | 51.49 |
VIT_01s0137g00610.t01 | Wine grape | nucleus | 36.9 | 35.43 |
Zm00001d025294_P002 | Maize | plasma membrane | 17.09 | 35.08 |
CDX98018 | Canola | nucleus | 34.03 | 34.98 |
Bra019804.1-P | Field mustard | nucleus | 33.39 | 34.26 |
KRH31353 | Soybean | nucleus | 34.66 | 34.07 |
Zm00001d003872_P002 | Maize | nucleus | 21.09 | 33.17 |
AT1G13030.1 | Thale cress | nucleus | 32.11 | 33.06 |
CDY26609 | Canola | nucleus | 31.15 | 32.55 |
CDY16053 | Canola | nucleus | 31.15 | 32.45 |
Bra026939.1-P | Field mustard | nucleus | 30.83 | 32.38 |
KRG97521 | Soybean | nucleus | 28.11 | 32.35 |
Zm00001d025291_P001 | Maize | plastid | 12.78 | 31.87 |
GSMUA_Achr9P07590_001 | Banana | nucleus | 19.81 | 31.55 |
EES12060 | Sorghum | nucleus | 34.34 | 30.71 |
CDY19377 | Canola | nucleus | 15.02 | 30.32 |
TraesCS1A01G328700.1 | Wheat | nucleus | 34.82 | 30.11 |
TraesCS1D01G331000.1 | Wheat | nucleus | 34.5 | 29.96 |
Os12t0288600-01 | Rice | nucleus | 26.84 | 29.95 |
TraesCS1B01G342400.2 | Wheat | nucleus | 34.66 | 29.6 |
Solyc02g067090.2.1 | Tomato | nucleus | 22.04 | 27.17 |
PGSC0003DMT400064747 | Potato | nucleus | 22.04 | 27.17 |
Zm00001d003875_P001 | Maize | nucleus, plastid | 8.15 | 26.84 |
Solyc05g013740.2.1 | Tomato | nucleus | 33.39 | 25.46 |
GSMUA_Achr9P17940_001 | Banana | nucleus | 10.22 | 23.27 |
Protein Annotations
EnsemblPlants:GSMUA_Achr9P01970_001 | EnsemblPlants:GSMUA_Achr9T01970_001 | EnsemblPlantsGene:GSMUA_Achr9G01970_001 | InterPro:Coilin | InterPro:Coilin_N | PANTHER:PTHR15197 |
PFAM:PF15862 | SEG:seg | UniParc:UPI000296BC39 | UniProt:M0TWQ4 | MapMan:35.1 | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_137.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr9G01970_001]
Coordinates
chr9:+:1497654..1509328
Molecular Weight (calculated)
70734.1 Da
IEP (calculated)
6.766
GRAVY (calculated)
-0.830
Length
626 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDAVRLRVE FDDHRVLTKT QRLEGLCRCW LLLPPELSTV SDVATHLVRA FALHLSCPHG VLLSMDEFVL PPFESSSIFR DKDIVRVKKK VAKTKQLLEI
101: CGDAYHIQDS KIVEKQPITS GNELLNIKDF HEDLELCKSK KGEDACEVEG NTTKRQILSS EETILKRKRK QSDKPQNSKK KIKLTSPTSE ETIVTADQEE
201: NVHSDLQKSP TLDKTHILSN RNEKHEKLVS SQNAVQKRNC HVTTKERHDQ VENCHRIPSQ QQLTDSMNKS PSRSARRKKA KRQWLREMAN QQLSENKQGE
301: KQANDVQGTL SKYKIVDQTI EIEEEIVPVI VRPGHIRFEP IDGDGEHDNT QSNGPVETLQ WNGTTSKKKG QKWGREKTLS KKSDDDYCNG AFNENMITEE
401: GEHVDDHINF ESLFPLTRLP EEGDILVYRL VELSSSWCPE LSSFRVGKVS SYDSISMKIV LLPIPEYPIS SQEKKDAEES AQEPDSTLYK EDGSLEIEYT
501: SLVDVRLLKG HDSDNLHNEK SKEKAQSNNW DLALVDANPR HSAAPLVESR PTMGWDQIDQ ALSERKAQLQ QTDTWAIKGS TTASWSYRAL RGSALGPTLA
601: LLRGTNGSSN ANSPGKHASG KYPSSK
101: CGDAYHIQDS KIVEKQPITS GNELLNIKDF HEDLELCKSK KGEDACEVEG NTTKRQILSS EETILKRKRK QSDKPQNSKK KIKLTSPTSE ETIVTADQEE
201: NVHSDLQKSP TLDKTHILSN RNEKHEKLVS SQNAVQKRNC HVTTKERHDQ VENCHRIPSQ QQLTDSMNKS PSRSARRKKA KRQWLREMAN QQLSENKQGE
301: KQANDVQGTL SKYKIVDQTI EIEEEIVPVI VRPGHIRFEP IDGDGEHDNT QSNGPVETLQ WNGTTSKKKG QKWGREKTLS KKSDDDYCNG AFNENMITEE
401: GEHVDDHINF ESLFPLTRLP EEGDILVYRL VELSSSWCPE LSSFRVGKVS SYDSISMKIV LLPIPEYPIS SQEKKDAEES AQEPDSTLYK EDGSLEIEYT
501: SLVDVRLLKG HDSDNLHNEK SKEKAQSNNW DLALVDANPR HSAAPLVESR PTMGWDQIDQ ALSERKAQLQ QTDTWAIKGS TTASWSYRAL RGSALGPTLA
601: LLRGTNGSSN ANSPGKHASG KYPSSK
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.