CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13030.1	KRH03376	AT3G48100.1	18642946
AT1G13030.1	KRH54462	AT3G48100.1	18642946
AT1G13030.1	KRH57009	AT3G48100.1	18642946
AT1G13030.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97521	Soybean	nucleus	69.54	81.43
GSMUA_Achr9P17930_001	Banana	cytosol	7.54	53.33
Os12t0288801-00	Rice	plastid	7.06	44.55
VIT_01s0137g00610.t01	Wine grape	nucleus	42.23	41.26
CDY16053	Canola	nucleus	36.26	38.44
CDX98018	Canola	nucleus	36.73	38.42
Bra026939.1-P	Field mustard	nucleus	35.95	38.42
CDY26609	Canola	nucleus	35.95	38.23
Bra019804.1-P	Field mustard	nucleus	36.42	38.03
AT1G13030.1	Thale cress	nucleus	36.26	37.99
GSMUA_Achr9P01970_001	Banana	nucleus	34.07	34.66
CDY19377	Canola	nucleus	15.7	32.26
Zm00001d025294_P002	Maize	plasma membrane	14.13	29.51
Zm00001d003872_P002	Maize	nucleus	18.37	29.4
Solyc02g067090.2.1	Tomato	nucleus	22.76	28.54
PGSC0003DMT400064747	Potato	nucleus	22.61	28.35
EES12060	Sorghum	nucleus	30.77	28.0
Solyc05g013740.2.1	Tomato	nucleus	35.79	27.77
TraesCS1A01G328700.1	Wheat	nucleus	31.55	27.76
Zm00001d025291_P001	Maize	plastid	10.83	27.49
TraesCS1D01G331000.1	Wheat	nucleus	30.77	27.18
Os12t0288600-01	Rice	nucleus	23.86	27.09
TraesCS1B01G342400.2	Wheat	nucleus	30.77	26.74
Zm00001d003875_P001	Maize	nucleus, plastid	7.69	25.79
GSMUA_Achr9P07590_001	Banana	nucleus	14.6	23.66
GSMUA_Achr9P17940_001	Banana	nucleus	7.22	16.73

Protein Annotations

EMBL:ACUP02007141	EnsemblPlants:KRH31353	EnsemblPlantsGene:GLYMA_11G243800	EntrezGene:100776892	InterPro:Coilin	InterPro:Coilin_N
PANTHER:PTHR15197	PFAM:PF15862	ProteinID:KRH31353	ProteinID:KRH31353.1	SEG:seg	UniParc:UPI00023CBA1E
UniProt:I1LNF9	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:33759603..33766398

Molecular Weight (calculated)

71994.8 Da

IEP (calculated)

8.708

GRAVY (calculated)

-0.929

Length

637 amino acids

Sequence
(BLAST)

001: MAETVRLRVV FEDRGMLSKS KKKQGLKRCW FLLKPQHTAI SDVASHLLNT FRLHRTCPHG IVLSMDGFVL PSFESTCILK DKDIVCVKRK GSVSTDDNKP
101: AMLPPAACEN QSIELPKLLT IEGLQEESGG EETMSHKDGD DQLEDAVYVE SESDRNVVSK KRKASKKLKS PSQKKIKLST AENLSVIPQV HEEENGSSEG
201: HIHHQLSVVK KDKKKHSNLS SQSNKSSNLN KQKNDKSDPT SDETRFVQPQ DESETKKLPS RSARRKKAKR RWLRELKLEN EMKEKKPHQT PVLEKDGQEL
301: PIKDNNCVVS DVHQKPDEES GEEDDIVPVE IRPGHIRFEP LKKDQDQAVT QDQFPVEIFQ WNGITNKKKG QKWGKERMSF RKQDGYEHSS QDCPTVRNAE
401: KEQPSNAIDF DKLKPYYTSL PKEGDVIAYR LIELTASWTP ELSSFRVGKI SRYDAKSNRI WLEPVLEYPF DFKKKIDEDA SSVQYNPSPY QENGSLEIEY
501: TSLADVRMVK HGNPDLKTVV VSSDAWVKTT KATNDITKEK LAAKATNGST DEKLAADQTT MGSCQPERGH ITAKENGEVN VWDEINEALK AKKAKLSKED
601: GWSRGGESSS TRSWSHRAMR CSALGPTMAL LRSNNGL

Best Arabidopsis Sequence Match ( AT1G13030.1 )
(BLAST)

001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI

Arabidopsis Description

COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.