Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g113720.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13030.1 | Solyc03g113720.2.1 | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400064747 | Potato | nucleus | 89.76 | 89.76 |
| GSMUA_Achr9P17930_001 | Banana | cytosol | 8.27 | 46.67 |
| Os12t0288801-00 | Rice | plastid | 8.46 | 42.57 |
| Zm00001d025291_P001 | Maize | plastid | 14.17 | 28.69 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 35.63 | 27.76 |
| Solyc05g013740.2.1 | Tomato | nucleus | 41.34 | 25.58 |
| CDY26609 | Canola | nucleus | 29.72 | 25.21 |
| Bra026939.1-P | Field mustard | nucleus | 29.53 | 25.17 |
| CDX98018 | Canola | nucleus | 29.72 | 24.79 |
| Bra019804.1-P | Field mustard | nucleus | 29.72 | 24.75 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 9.25 | 24.74 |
| CDY16053 | Canola | nucleus | 29.13 | 24.63 |
| AT1G13030.1 | Thale cress | nucleus | 28.94 | 24.18 |
| KRH31353 | Soybean | nucleus | 28.54 | 22.76 |
| CDY19377 | Canola | nucleus | 13.78 | 22.58 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 27.17 | 22.04 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 16.34 | 21.12 |
| TraesCS1A01G328700.1 | Wheat | nucleus | 24.41 | 17.13 |
| KRG97521 | Soybean | nucleus | 18.31 | 17.1 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 24.02 | 16.92 |
| EES12060 | Sorghum | nucleus | 23.03 | 16.71 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 23.82 | 16.51 |
| Os12t0288600-01 | Rice | nucleus | 16.34 | 14.79 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 7.68 | 14.18 |
| Zm00001d025294_P002 | Maize | plasma membrane | 7.68 | 12.79 |
| Zm00001d003872_P002 | Maize | nucleus | 8.66 | 11.06 |
Protein Annotations
| EnsemblPlants:Solyc02g067090.2.1 | EnsemblPlantsGene:Solyc02g067090.2 | InterPro:Coilin | InterPro:Coilin_N | PANTHER:PTHR15197 | PFAM:PF15862 |
| SEG:seg | UniParc:UPI0002768FFD | UniProt:K4B741 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2:+:37319759..37328943
Molecular Weight (calculated)
56919.4 Da
IEP (calculated)
9.664
GRAVY (calculated)
-0.937
Length
508 amino acids
Sequence
(BLAST)
(BLAST)
001: MERVRLRLTF EDPNILSDLQ KSEGLRCSWF LLKPQLLHKT ISDLSSHILR TFQLHGSCPH GLLLSMDGFL LPPFESTCIL KDKCIVSVKK KGGVLAIEGN
101: DAPSIVENIR IVEKQPVNTR HLLLANKEFD NESGGYESED EEGADPTKVS GSHLENSLGC NIISEKRKAT ETLPVSKKKK HCSEVAEKVD EQTKKSQQGL
201: TSKKSHCKQK KLADPDSKDL DNIKGSAESS KVNDSISGMK KSDKIQEKGV ENVEATTKPE RVKKGPSRSA RKQYAKRQWL REMVKIYKNV ASEAEGLKEL
301: QANGGRRAGK LHPKWLVNGE TDGKPMARRN WKQQQSKTEY QEVNGQPKGL LHWKKLREED KGRDTNKQDQ ANEKSTFCGE PGQHNDMEAE TIPDQALQHD
401: QVQEIVFPSI DEVCLVKNGN SDSVAGLPAT NKSNPVLKAA KKKTNGPAIE KGVNLWEQHS ETINAEKEQL HEESSWGTWS SAKKSSWSER TLKGSARGPT
501: MAFRRYKR
101: DAPSIVENIR IVEKQPVNTR HLLLANKEFD NESGGYESED EEGADPTKVS GSHLENSLGC NIISEKRKAT ETLPVSKKKK HCSEVAEKVD EQTKKSQQGL
201: TSKKSHCKQK KLADPDSKDL DNIKGSAESS KVNDSISGMK KSDKIQEKGV ENVEATTKPE RVKKGPSRSA RKQYAKRQWL REMVKIYKNV ASEAEGLKEL
301: QANGGRRAGK LHPKWLVNGE TDGKPMARRN WKQQQSKTEY QEVNGQPKGL LHWKKLREED KGRDTNKQDQ ANEKSTFCGE PGQHNDMEAE TIPDQALQHD
401: QVQEIVFPSI DEVCLVKNGN SDSVAGLPAT NKSNPVLKAA KKKTNGPAIE KGVNLWEQHS ETINAEKEQL HEESSWGTWS SAKKSSWSER TLKGSARGPT
501: MAFRRYKR
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.