Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018084.1-P | |
| Bra019524.1-P | |
| Bra033773.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13030.1 | Bra018084.1-P | AT3G48100.1 | 18642946 |
| AT1G13030.1 | Bra019524.1-P | AT3G48100.1 | 18642946 |
| AT1G13030.1 | Bra033773.1-P | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98018 | Canola | nucleus | 90.66 | 90.8 |
| CDY19377 | Canola | nucleus | 42.95 | 84.52 |
| Bra026939.1-P | Field mustard | nucleus | 68.85 | 70.47 |
| AT1G13030.1 | Thale cress | nucleus | 67.05 | 67.27 |
| GSMUA_Achr9P17930_001 | Banana | cytosol | 7.21 | 48.89 |
| Os12t0288801-00 | Rice | plastid | 6.72 | 40.59 |
| VIT_01s0137g00610.t01 | Wine grape | nucleus | 41.48 | 38.8 |
| KRH31353 | Soybean | nucleus | 38.03 | 36.42 |
| GSMUA_Achr9P01970_001 | Banana | nucleus | 34.26 | 33.39 |
| KRG97521 | Soybean | nucleus | 28.69 | 32.17 |
| Zm00001d003872_P002 | Maize | nucleus | 20.16 | 30.9 |
| Zm00001d025294_P002 | Maize | plasma membrane | 15.41 | 30.82 |
| Solyc02g067090.2.1 | Tomato | nucleus | 24.75 | 29.72 |
| PGSC0003DMT400064747 | Potato | nucleus | 24.43 | 29.33 |
| Solyc05g013740.2.1 | Tomato | nucleus | 39.02 | 28.99 |
| Os12t0288600-01 | Rice | nucleus | 25.25 | 27.45 |
| EES12060 | Sorghum | nucleus | 31.48 | 27.43 |
| TraesCS1A01G328700.1 | Wheat | nucleus | 31.8 | 26.8 |
| Zm00001d025291_P001 | Maize | plastid | 10.98 | 26.69 |
| TraesCS1D01G331000.1 | Wheat | nucleus | 31.15 | 26.35 |
| Zm00001d003875_P001 | Maize | nucleus, plastid | 8.2 | 26.32 |
| TraesCS1B01G342400.2 | Wheat | nucleus | 31.48 | 26.19 |
| GSMUA_Achr9P07590_001 | Banana | nucleus | 13.28 | 20.61 |
| GSMUA_Achr9P17940_001 | Banana | nucleus | 6.07 | 13.45 |
Protein Annotations
Description
AT1G13030 (E=8e-173) | sphere organelles protein-related
Coordinates
chrA06:+:4310032..4312931
Molecular Weight (calculated)
68315.0 Da
IEP (calculated)
6.341
GRAVY (calculated)
-0.957
Length
610 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPEKVRVRL SFEDQRVLSK SQKKQGLKRS WVVLDPKCHR TVSEFSDHLL HTFCLFEACP HGISLSMDGF VLPPFESSCV LKDKDIVCVK RKKEPLLEIV
101: EEDSEENVCA EIEAEERAPG VMLLANEEFQ KETGGYESES EEDELEEIVP VKKTSKKRKA SSKSTSSKRK KCKLATTEES PLERESEAVV SKGSAVKKRK
201: TSDAQRTEND QQDEVKAKSM TKSKKSSKQA ESKEPNEQCN VSGEAKKTPS RSARRKKAKR QWLREKTKQE KEEYLQLKQK QQMVVAPNQK PAFTINHQVT
301: KENRSEALEP QQPDENGDGV GDEVVPVEVR PGHIRFEPLD ETDQASAEEI APPAEKFVWN GNMTKKKGQK WGTEKAGLSK RYAQDMDEDT YQTQSAEAET
401: LAKGQIDFEQ LVAYSGSVKK GDVIAYRLIE LTSSWTPEVS SFRVGKISYY DPESKKVTLM PVEEYPIEKK TEEDTDDSSM QPDTSLYKED GSLEIEFSSL
501: LDVRCIKTTS SNNSEVARSA PLKPVQTATN PKLSSDNGLQ TPVKENGKGD PWEELSNALS AKKAQLAQAN NGGWNNKKGS SSGGSAWSYK ALRGSGMGPV
601: MKYLRSQNEI
101: EEDSEENVCA EIEAEERAPG VMLLANEEFQ KETGGYESES EEDELEEIVP VKKTSKKRKA SSKSTSSKRK KCKLATTEES PLERESEAVV SKGSAVKKRK
201: TSDAQRTEND QQDEVKAKSM TKSKKSSKQA ESKEPNEQCN VSGEAKKTPS RSARRKKAKR QWLREKTKQE KEEYLQLKQK QQMVVAPNQK PAFTINHQVT
301: KENRSEALEP QQPDENGDGV GDEVVPVEVR PGHIRFEPLD ETDQASAEEI APPAEKFVWN GNMTKKKGQK WGTEKAGLSK RYAQDMDEDT YQTQSAEAET
401: LAKGQIDFEQ LVAYSGSVKK GDVIAYRLIE LTSSWTPEVS SFRVGKISYY DPESKKVTLM PVEEYPIEKK TEEDTDDSSM QPDTSLYKED GSLEIEFSSL
501: LDVRCIKTTS SNNSEVARSA PLKPVQTATN PKLSSDNGLQ TPVKENGKGD PWEELSNALS AKKAQLAQAN NGGWNNKKGS SSGGSAWSYK ALRGSGMGPV
601: MKYLRSQNEI
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
Arabidopsis Description
COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.