Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003782.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| AT1G74890.1 | Thale cress | nucleus | 81.73 | 78.16 |
| CDX73122 | Canola | cytosol, golgi, nucleus | 69.54 | 77.4 |
| CDY45402 | Canola | cytosol, golgi, peroxisome | 71.57 | 76.63 |
| CDX85860 | Canola | endoplasmic reticulum, golgi, vacuole | 83.25 | 75.23 |
| CDY41014 | Canola | nucleus | 72.08 | 66.36 |
| CDY26701 | Canola | nucleus | 71.07 | 65.73 |
| CDX96681 | Canola | cytosol | 69.04 | 65.7 |
| CDX83788 | Canola | cytosol | 70.05 | 65.09 |
| CDY68129 | Canola | cytosol, nucleus, plastid | 58.38 | 64.25 |
| CDY36905 | Canola | nucleus | 58.38 | 62.84 |
| CDY54257 | Canola | cytosol, nucleus, peroxisome | 58.38 | 62.84 |
| CDY70164 | Canola | nucleus | 58.38 | 62.84 |
| CDY59856 | Canola | cytosol, nucleus, peroxisome | 57.36 | 61.75 |
| CDY21807 | Canola | cytosol, nucleus, peroxisome | 57.36 | 61.41 |
| CDX84366 | Canola | nucleus | 54.82 | 56.84 |
| CDY00336 | Canola | nucleus | 54.82 | 56.84 |
| Solyc03g113720.2.1 | Tomato | nucleus | 55.84 | 56.41 |
| PGSC0003DMT400063187 | Potato | cytosol | 55.84 | 55.0 |
| CDY71200 | Canola | cytosol | 34.52 | 53.54 |
| CDY59626 | Canola | cytosol | 34.52 | 53.54 |
| CDX72141 | Canola | cytosol | 34.52 | 53.54 |
| KRH63457 | Soybean | cytosol | 55.33 | 53.43 |
| CDX75990 | Canola | cytosol | 34.01 | 52.76 |
| KRH54462 | Soybean | cytosol | 54.31 | 52.45 |
| KRH03376 | Soybean | nucleus | 54.82 | 52.17 |
| KRH57009 | Soybean | nucleus | 55.33 | 51.66 |
| CDY35445 | Canola | cytosol | 41.62 | 50.93 |
| CDY22469 | Canola | cytosol | 40.61 | 50.63 |
| CDY65526 | Canola | cytosol | 38.58 | 48.1 |
| CDY27219 | Canola | cytosol, nucleus, plastid | 40.1 | 46.75 |
| VIT_17s0000g07580.t01 | Wine grape | cytosol, nucleus, plastid | 57.36 | 43.8 |
| CDY45155 | Canola | nucleus | 50.25 | 43.42 |
| CDY20630 | Canola | nucleus | 51.78 | 41.3 |
| CDY30913 | Canola | nucleus | 49.75 | 41.18 |
| CDY37975 | Canola | nucleus | 52.79 | 41.11 |
| CDX93424 | Canola | nucleus | 52.79 | 41.11 |
| CDY20948 | Canola | nucleus | 52.28 | 40.71 |
| CDY66046 | Canola | nucleus | 51.78 | 40.32 |
| CDY34890 | Canola | nucleus | 51.78 | 39.23 |
| CDY07801 | Canola | nucleus | 52.28 | 38.87 |
| CDY23856 | Canola | nucleus | 42.13 | 38.6 |
| CDX79942 | Canola | nucleus | 42.13 | 38.6 |
| CDY22518 | Canola | nucleus | 42.13 | 38.25 |
| CDY14761 | Canola | cytoskeleton, cytosol, nucleus | 42.64 | 37.84 |
| CDY35419 | Canola | nucleus | 41.12 | 37.5 |
| CDY06934 | Canola | cytosol | 42.13 | 37.39 |
| CDY06142 | Canola | cytosol | 41.62 | 34.75 |
| CDX72077 | Canola | cytosol | 41.12 | 34.47 |
| CDX76036 | Canola | nucleus | 39.09 | 34.22 |
| CDX67674 | Canola | cytosol | 40.61 | 34.19 |
| CDY30966 | Canola | cytosol | 38.58 | 32.76 |
Protein Annotations
| EnsemblPlants:CDX68161 | EnsemblPlantsGene:GSBRNA2T00099415001 | Gene3D:3.40.50.2300 | GO:A0A078BTP6 | GO:GO:0000160 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | InterPro:CheY-like_superfamily | InterPro:IPR001789 | InterPro:Sig_transdc_resp-reg_receiver |
| PANTHER:PTHR43874 | PANTHER:PTHR43874:SF17 | PFAM:PF00072 | PFscan:PS50110 | ProteinID:CDX68161 | ProteinID:CDX68161.1 |
| SEG:seg | SMART:SM00448 | SUPFAM:SSF52172 | UniParc:UPI0002541647 | MapMan:11.4.2.5 | : |
Description
BnaA07g22010D
Coordinates
chrLK031787:+:4193807..4195098
Molecular Weight (calculated)
21851.9 Da
IEP (calculated)
4.849
GRAVY (calculated)
-0.406
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVGDLSSST ISSPELHVLA VDDSFVDRKV IERLLRISAC KVTTVESGTR ALQYLGLDGD DAPSALKDLK VNLIVTDYSM PGLTGYELLK KIKESSAFRE
101: IPVVIMSSEN IQPRIDQCMT EGAEDFLLKP VKLADVKRLT ELIIRNVEPE EEDKSKHSYP NRILQNNTDS SSSHDDVSSL DDDTPSSKRM KTRIHGS
101: IPVVIMSSEN IQPRIDQCMT EGAEDFLLKP VKLADVKRLT ELIIRNVEPE EEDKSKHSYP NRILQNNTDS SSSHDDVSSL DDDTPSSKRM KTRIHGS
001: MALRDLSSSL SSSSSPELHV LAVDDSFVDR KVIERLLKIS ACKVTTVESG TRALQYLGLD GDNGSSGLKD LKVNLIVTDY SMPGLTGYEL LKKIKESSAL
101: REIPVVIMSS ENIQPRIEQC MIEGAEEFLL KPVKLADVKR LKELIMRGGE AEEGKTKKLS PKRILQNDID SSPSSSSTSS SSSSHDVSSL DDDTPSSKRI
201: KLESRG
101: REIPVVIMSS ENIQPRIEQC MIEGAEEFLL KPVKLADVKR LKELIMRGGE AEEGKTKKLS PKRILQNDID SSPSSSSTSS SSSSHDVSSL DDDTPSSKRI
201: KLESRG
Arabidopsis Description
ARR15Two-component response regulator ARR15 [Source:UniProtKB/Swiss-Prot;Acc:Q7G8V2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.