CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68161
CDX69273
CDX73122
CDX75624
CDX80928
CDX85860
CDY01120
CDY11316
CDY20340
CDY24170
CDY29727
CDY36943
CDY42827
CDY43444
CDY45402
CDY47326
CDY51514
CDY55390
CDY61202
CDY67729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29910.1	CDX68161	AT1G74890.1	18642946
AT1G29910.1	CDX73122	AT1G74890.1	18642946
AT1G29910.1	CDX85860	AT1G74890.1	18642946
AT1G29910.1	CDY45402	AT1G74890.1	18642946
AT1G29910.1	CDY24170	AT3G47620.1	21798944
AT1G29910.1	CDY36943	AT3G47620.1	21798944
AT1G29920.1	CDX68161	AT1G74890.1	18642946
AT1G29920.1	CDX73122	AT1G74890.1	18642946
AT1G29920.1	CDX85860	AT1G74890.1	18642946
AT1G29920.1	CDY45402	AT1G74890.1	18642946
AT1G29920.1	CDY20340	AT3G44880.1	22366162
AT1G29920.1	CDY29727	AT3G44880.1	22366162
AT1G29920.1	CDY01120	AT4G13250.1	22366162
AT1G29920.1	CDY47326	AT4G13250.1	22366162
AT1G29920.1	CDY67729	AT4G13250.1	22366162
AT1G29920.1	CDX69273	AT4G37000.1	22366162
AT1G29920.1	CDX75624	AT4G37000.1	22366162
AT1G29920.1	CDX80928	AT5G04900.1	22366162
AT1G29920.1	CDY11316	AT5G04900.1	22366162
AT1G29920.1	CDY43444	AT5G04900.1	22366162
AT1G29930.1	CDY42827	AT2G42580.1	19000166
AT1G29930.1	CDY51514	AT2G42580.1	19000166
AT1G29930.1	CDY55390	AT2G42580.1	19000166
AT1G29930.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90218	Canola	plastid	100.0	100.0
CDY66768	Canola	plastid	99.25	99.25
CDY43676	Canola	plastid	99.25	99.25
CDY26306	Canola	plastid	99.25	99.25
Bra010807.1-P	Field mustard	plastid	98.5	98.5
CDY43198	Canola	plastid	98.13	98.13
CDX99866	Canola	plastid	98.13	98.13
CDX84647	Canola	plastid	97.38	97.74
AT2G34420.1	Thale cress	plastid	97.0	97.74
AT1G29930.1	Thale cress	plastid	97.38	97.38
CDY30369	Canola	plastid	55.43	97.37
CDX79562	Canola	plastid	97.0	97.37
CDX98158	Canola	plastid	97.0	97.0
AT1G29910.1	Thale cress	plastid	97.0	97.0
AT1G29920.1	Thale cress	plastid	97.0	97.0
CDY17248	Canola	plastid	96.63	96.99
CDY17247	Canola	plastid	96.63	96.99
CDX84316	Canola	plastid	96.25	96.62
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	47.94	96.24
AT2G34430.1	Thale cress	plastid	95.13	95.49
CDY17250	Canola	mitochondrion, plastid	49.06	80.37
CDX84315	Canola	plastid	96.25	78.12
CDX93077	Canola	plastid	75.28	75.85
CDY15050	Canola	plastid	75.28	75.85
CDY13732	Canola	plastid	74.91	75.19
CDY20039	Canola	plastid	74.53	75.09
CDY49770	Canola	plastid	74.53	74.81
CDY00149	Canola	plastid	74.16	74.44
CDY03989	Canola	plastid	74.16	74.44
CDX83726	Canola	plastid	73.78	74.06
CDY66572	Canola	cytosol, extracellular, plastid	37.45	69.93
CDY52238	Canola	plastid	59.55	67.95
CDY14320	Canola	plastid	59.55	67.95
CDY18320	Canola	plastid	59.18	67.52
CDY28778	Canola	plastid	58.43	60.94
CDX73435	Canola	plastid	36.7	40.66
CDY07517	Canola	plastid	36.33	40.25
CDX78277	Canola	plastid	36.33	40.25
CDX67613	Canola	plastid	36.33	40.25
CDY05098	Canola	plastid	41.95	40.0
CDX90755	Canola	plastid	41.57	39.64
CDY60092	Canola	plastid	41.2	39.15
CDX83967	Canola	extracellular, vacuole	3.37	39.13
CDY43936	Canola	plastid	35.58	37.11
CDX89120	Canola	plastid	35.21	36.72
CDY51572	Canola	plastid	34.46	35.52
CDY45980	Canola	plastid	41.57	34.26
CDY20401	Canola	plastid	41.57	33.95
CDY44667	Canola	plastid	36.33	33.68
CDY53084	Canola	plastid	36.33	33.56
CDY04834	Canola	plastid	35.58	33.1
CDX96677	Canola	plastid	32.96	33.08
CDX83783	Canola	plastid	32.96	33.08
CDX99044	Canola	plastid	31.09	32.94
CDY47410	Canola	plastid	31.09	32.94
CDX86864	Canola	plastid	25.47	32.54
CDY12903	Canola	plastid	32.96	32.47
CDY57375	Canola	plastid	32.96	32.47
CDY15020	Canola	plastid	32.58	32.1
CDY47581	Canola	plastid	32.58	31.87
CDY03835	Canola	plastid	32.58	31.87
CDY52865	Canola	plastid	30.71	31.66
CDY26347	Canola	plastid	29.96	31.37
CDX81735	Canola	plastid	30.34	31.27
CDX74808	Canola	plastid	32.21	31.16
CDX96833	Canola	plastid	29.96	30.89
CDY20518	Canola	plastid	31.84	30.8
CDY43213	Canola	mitochondrion, plastid	29.21	30.23
CDY33376	Canola	plastid	29.21	30.23
CDY35042	Canola	plastid	29.21	30.23
CDY17055	Canola	mitochondrion, plastid	28.84	29.84
CDX83966	Canola	plastid	25.47	29.82
CDY61708	Canola	plastid	27.34	20.86

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	GO:A0A078HBX5	UniProt:A0A078HBX5	EnsemblPlants:CDY35271	ProteinID:CDY35271
ProteinID:CDY35271.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00058211001	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF55	SUPFAM:SSF103511	UniParc:UPI0004EBE726	:

Description

BnaC03g59520DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078HBX5]

Coordinates

chrLK032349:-:116774..117902

Molecular Weight (calculated)

28297.8 Da

IEP (calculated)

5.111

GRAVY (calculated)

0.030

Length

267 amino acids

Sequence
(BLAST)

001: MAASTMALSS PAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSERVKYLG PFSGEPPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHCRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS EGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGD GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKEIKNGR LAMFSMFGFF VQAIVTGKGP LENLADHLAD PVNNNAWAFA TNFVPGK

Best Arabidopsis Sequence Match ( AT1G29930.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.3Chlorophyll a-b binding protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P04778]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.