CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G40100.1	Thale cress	plastid	55.14	69.93
CDY20518	Canola	plastid	53.71	68.12
CDX74808	Canola	plastid	53.43	67.75
KRG97750	Soybean	plastid	44.29	55.76
KRH31130	Soybean	nucleus, plastid	44.29	54.96
CDY04834	Canola	plastid	43.14	52.61
CDY44667	Canola	plastid	42.57	51.74
CDY53084	Canola	plastid	42.57	51.56
CDX83967	Canola	extracellular, vacuole	2.57	39.13
CDY30369	Canola	plastid	15.14	34.87
CDY66572	Canola	cytosol, extracellular, plastid	13.14	32.17
CDY17250	Canola	mitochondrion, plastid	14.29	30.67
CDX67613	Canola	plastid	20.86	30.29
CDY07517	Canola	plastid	20.86	30.29
CDX73435	Canola	plastid	20.86	30.29
CDX78277	Canola	plastid	20.86	30.29
CDY17247	Canola	plastid	21.14	27.82
CDY17248	Canola	plastid	21.14	27.82
CDX84316	Canola	plastid	21.14	27.82
CDX84647	Canola	plastid	21.14	27.82
CDX79562	Canola	plastid	21.14	27.82
CDY47410	Canola	plastid	19.71	27.38
CDX99044	Canola	plastid	19.71	27.38
CDX99866	Canola	plastid	20.86	27.34
CDY43676	Canola	plastid	20.86	27.34
CDY43198	Canola	plastid	20.86	27.34
CDY35271	Canola	plastid	20.86	27.34
CDY66768	Canola	plastid	20.86	27.34
CDY26306	Canola	plastid	20.86	27.34
CDX90218	Canola	plastid	20.86	27.34
CDX98158	Canola	plastid	20.57	26.97
CDY43936	Canola	plastid	19.14	26.17
CDX89120	Canola	plastid	18.86	25.78
CDY51572	Canola	plastid	18.86	25.48
CDY15050	Canola	plastid	19.14	25.28
CDY20039	Canola	plastid	19.14	25.28
CDX93077	Canola	plastid	19.14	25.28
CDY33376	Canola	plastid	18.57	25.19
CDY13732	Canola	plastid	19.14	25.19
CDY49770	Canola	plastid	19.14	25.19
CDX83726	Canola	plastid	19.14	25.19
CDY00149	Canola	plastid	19.14	25.19
CDX81735	Canola	plastid	18.57	25.1
CDY52865	Canola	plastid	18.57	25.1
CDY03989	Canola	plastid	18.86	24.81
CDY35042	Canola	plastid	18.29	24.81
CDX83966	Canola	plastid	15.43	23.68
CDX96833	Canola	plastid	17.43	23.55
CDY18320	Canola	plastid	15.71	23.5
CDY14320	Canola	plastid	15.43	23.08
CDY52238	Canola	plastid	15.14	22.65
CDX96677	Canola	plastid	17.14	22.56
CDX90755	Canola	plastid	18.0	22.5
CDY05098	Canola	plastid	18.0	22.5
CDX84315	Canola	plastid	21.14	22.49
CDY60092	Canola	plastid	18.0	22.42
CDX83783	Canola	plastid	16.86	22.18
CDY57375	Canola	plastid	17.14	22.14
CDY15020	Canola	plastid	17.14	22.14
CDY12903	Canola	plastid	17.14	22.14
CDY47581	Canola	plastid	17.14	21.98
CDY03835	Canola	plastid	17.14	21.98
CDY43213	Canola	mitochondrion, plastid	15.71	21.32
CDY17055	Canola	mitochondrion, plastid	15.71	21.32
CDY26347	Canola	plastid	15.43	21.18
CDY28778	Canola	plastid	15.43	21.09
CDY20401	Canola	plastid	19.14	20.49
CDY45980	Canola	plastid	18.86	20.37
CDX86864	Canola	plastid	10.57	17.7

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	GO:A0A078J5L7	UniProt:A0A078J5L7	EnsemblPlants:CDY61708	ProteinID:CDY61708
ProteinID:CDY61708.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00034252001
InterPro:IPR023329	InterPro:IPR034751	PFAM:PF00504	PFAM:PF03226	PFscan:PS51792	PANTHER:PTHR21649
PANTHER:PTHR21649:SF32	SUPFAM:SSF103511	UniParc:UPI0004EEA886	InterPro:Yippee	InterPro:Yippee/Mis18/Cereblon	:

Description

BnaC04g56710DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078J5L7]

Coordinates

chrLK034030:-:5562..9883

Molecular Weight (calculated)

38801.8 Da

IEP (calculated)

8.140

GRAVY (calculated)

-0.147

Length

350 amino acids

Sequence
(BLAST)

001: MATTTAAATS GIFGIRIQDP RPGTGRVQAR FGFSFGKMKP APPPKKSRQD SWEIQPTPFQ PYTEVFGIQR FRECELIHGR WAMLGTLGAI AVEGLTGIAW
101: QDAGKVELVE GSSYLGQPLP FSLTTLIWIE VLVMGYIEFQ RNAELDPEKR IYPGGSFDPL GLGSDPEKLD TLKLAEIKHS RLAMVAFLIF GLQAAITGKG
201: PISFLATLTI SEPLYLWVIE MGRLFVVHLE GKIYSCKHCK THLALYEDII SKSFHCKHGK AYLFNKVSNV TIGETEDRMM MTGKHTVADI FCVSCGSIVG
301: WRYETAHEKS QKYKEGKSVL ERFKISGPDG SNYWVSSHGR HIGGSDADDS

Best Arabidopsis Sequence Match ( AT2G40110.1 )
(BLAST)

001: MGRLFVVNLE GKIYSCKHCK THLATYEDII SKSFHCKHGK AYLFNKVANV SIGETEERLM MTGKHTVADI FCVSCGSIVG WKYETAHEKN QKYKEGKSVL
101: ERFKISGPDG SNYWVSSHGR HIGGSDADDA

Arabidopsis Description

Protein yippee-like [Source:UniProtKB/TrEMBL;Acc:Q8LE51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.