Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 7
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74808 | Canola | plastid | 90.58 | 90.58 |
| Bra004989.1-P | Field mustard | plastid | 90.58 | 90.58 |
| CDY20518 | Canola | plastid | 90.22 | 90.22 |
| KRG97750 | Soybean | plastid | 76.81 | 76.26 |
| KRH31130 | Soybean | nucleus, plastid | 76.45 | 74.82 |
| AT5G01530.1 | Thale cress | plastid | 71.01 | 67.59 |
| AT3G08940.2 | Thale cress | plastid | 68.48 | 65.85 |
| CDY61708 | Canola | plastid | 69.93 | 55.14 |
| AT3G54890.1 | Thale cress | plastid | 32.25 | 36.93 |
| AT1G15820.1 | Thale cress | plastid | 31.16 | 33.33 |
| AT3G47470.1 | Thale cress | plastid | 30.07 | 33.07 |
| AT3G61470.1 | Thale cress | plastid | 30.43 | 32.68 |
| AT2G34430.1 | Thale cress | plastid | 30.07 | 31.2 |
| AT2G34420.1 | Thale cress | plastid | 29.71 | 30.94 |
| AT1G19150.1 | Thale cress | plastid | 30.07 | 30.74 |
| AT4G10340.1 | Thale cress | plastid | 30.8 | 30.36 |
| AT1G29930.1 | Thale cress | plastid | 29.35 | 30.34 |
| AT1G29920.1 | Thale cress | plastid | 29.35 | 30.34 |
| AT1G29910.1 | Thale cress | plastid | 29.35 | 30.34 |
| AT2G05070.1 | Thale cress | plastid | 27.9 | 29.06 |
| AT1G45474.2 | Thale cress | mitochondrion | 26.81 | 28.91 |
| AT5G54270.1 | Thale cress | plastid | 26.45 | 27.55 |
| AT1G61520.1 | Thale cress | plastid | 27.17 | 27.47 |
| AT3G27690.2 | Thale cress | golgi, plastid | 28.26 | 26.17 |
| AT1G76570.1 | Thale cress | plastid | 30.07 | 25.38 |
| AT5G28450.1 | Thale cress | plastid | 15.22 | 24.28 |
| AT2G05100.2 | Thale cress | plastid | 26.45 | 23.03 |
Protein Annotations
| MapMan:1.1.1.1.2 | Gene3D:1.10.3460.10 | EntrezGene:818599 | UniProt:A0A178VTY4 | ProteinID:AEC09778.1 | EMBL:AF134128 |
| ArrayExpress:AT2G40100 | EnsemblPlantsGene:AT2G40100 | RefSeq:AT2G40100 | TAIR:AT2G40100 | RefSeq:AT2G40100-TAIR-G | EnsemblPlants:AT2G40100.1 |
| TAIR:AT2G40100.1 | EMBL:AY070392 | EMBL:AY088398 | EMBL:AY096735 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind |
| InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 |
| GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 |
| GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009941 | GO:GO:0009987 |
| GO:GO:0010114 | GO:GO:0010218 | GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0031409 | GO:GO:0046872 | InterPro:IPR023329 |
| Symbol:LHCB4.3 | RefSeq:NP_181539.1 | ProteinID:OAP08841.1 | PFAM:PF00504 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000039 | PO:PO:0000045 | PO:PO:0000112 | PO:PO:0000223 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006016 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF32 |
| UniProt:Q9S7W1 | SUPFAM:SSF103511 | TMHMM:TMhelix | UniParc:UPI000009FB18 | SEG:seg | : |
Description
LHCB4.3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VTY4]
Coordinates
chr2:+:16745628..16747424
Molecular Weight (calculated)
30213.2 Da
IEP (calculated)
4.991
GRAVY (calculated)
-0.097
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTTAAAAS GIFGIRIQDP RPGTGRVQAR FGFSFGKKKP APPPKKSRQV QDDGDRLVWF PGANPPEWLD GSMIGDRGFD PFGLGKPAEY LQYDFDGLDQ
101: NLAKNVAGDI IGIIQESSEI KPTPFQPYTE VFGIQRFREC ELIHGRWAML GTLGAIAVEA LTGIAWQDAG KVELVEGSSY LGQPLPFSLT TLIWIEVLVV
201: GYIEFQRNSE LDPEKRIYPG GYFDPLGLAA DPEKLDTLKL AEIKHSRLAM VAFLIFALQA AFTGKGPVSF LATFNN
101: NLAKNVAGDI IGIIQESSEI KPTPFQPYTE VFGIQRFREC ELIHGRWAML GTLGAIAVEA LTGIAWQDAG KVELVEGSSY LGQPLPFSLT TLIWIEVLVV
201: GYIEFQRNSE LDPEKRIYPG GYFDPLGLAA DPEKLDTLKL AEIKHSRLAM VAFLIFALQA AFTGKGPVSF LATFNN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.