Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83783 | Canola | plastid | 87.04 | 88.35 |
| Bra016522.1-P | Field mustard | plastid | 86.3 | 87.59 |
| CDX96677 | Canola | plastid | 85.56 | 86.84 |
| Solyc12g009200.1.1 | Tomato | nucleus, plastid | 74.07 | 76.92 |
| VIT_11s0016g00730.t01 | Wine grape | plastid | 73.7 | 76.83 |
| PGSC0003DMT400007514 | Potato | plastid | 73.7 | 76.54 |
| KRH37524 | Soybean | plastid | 73.33 | 76.15 |
| KRH12566 | Soybean | plastid | 72.59 | 75.38 |
| GSMUA_Achr9P18200_001 | Banana | plastid | 35.56 | 70.07 |
| Os09t0439500-01 | Rice | plastid | 67.04 | 68.56 |
| TraesCS5B01G210800.2 | Wheat | cytosol, plastid | 60.0 | 68.07 |
| Zm00001d005814_P002 | Maize | plastid | 66.3 | 66.05 |
| TraesCS5D01G219100.1 | Wheat | plastid | 64.81 | 63.64 |
| KXG35708 | Sorghum | plastid | 64.81 | 63.64 |
| TraesCS5A01G213000.1 | Wheat | plastid | 64.07 | 63.37 |
| HORVU5Hr1G062240.1 | Barley | plastid | 64.44 | 61.05 |
| AT3G61470.1 | Thale cress | plastid | 52.96 | 55.64 |
| AT5G28450.1 | Thale cress | plastid | 28.52 | 44.51 |
| AT3G47470.1 | Thale cress | plastid | 39.26 | 42.23 |
| AT1G61520.1 | Thale cress | plastid | 37.41 | 37.0 |
| AT1G45474.2 | Thale cress | mitochondrion | 34.81 | 36.72 |
| AT3G54890.1 | Thale cress | plastid | 31.85 | 35.68 |
| AT1G15820.1 | Thale cress | plastid | 34.07 | 35.66 |
| AT2G34430.1 | Thale cress | plastid | 33.7 | 34.21 |
| AT2G34420.1 | Thale cress | plastid | 32.96 | 33.58 |
| AT1G29910.1 | Thale cress | plastid | 32.96 | 33.33 |
| AT1G29930.1 | Thale cress | plastid | 32.96 | 33.33 |
| AT1G29920.1 | Thale cress | plastid | 32.96 | 33.33 |
| AT2G05070.1 | Thale cress | plastid | 31.85 | 32.45 |
| AT4G10340.1 | Thale cress | plastid | 31.48 | 30.36 |
| AT5G54270.1 | Thale cress | plastid | 29.63 | 30.19 |
| AT2G40100.1 | Thale cress | plastid | 30.74 | 30.07 |
| AT3G08940.2 | Thale cress | plastid | 31.85 | 29.97 |
| AT5G01530.1 | Thale cress | plastid | 31.85 | 29.66 |
| AT3G27690.2 | Thale cress | golgi, plastid | 31.48 | 28.52 |
| AT1G76570.1 | Thale cress | plastid | 31.48 | 25.99 |
| AT2G05100.2 | Thale cress | plastid | 28.52 | 24.29 |
Protein Annotations
| MapMan:1.1.4.1.6 | Gene3D:1.10.3460.10 | EntrezGene:838498 | UniProt:A0A178WEZ5 | ProteinID:AAF82226.1 | ProteinID:AEE29811.1 |
| ArrayExpress:AT1G19150 | EnsemblPlantsGene:AT1G19150 | RefSeq:AT1G19150 | TAIR:AT1G19150 | RefSeq:AT1G19150-TAIR-G | EnsemblPlants:AT1G19150.1 |
| TAIR:AT1G19150.1 | EMBL:AY086461 | EMBL:BT002807 | EMBL:BT020322 | EMBL:BT020554 | InterPro:Chloro_AB-bd_pln |
| InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 |
| GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009941 | GO:GO:0009987 |
| GO:GO:0010114 | GO:GO:0010218 | GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0031409 | GO:GO:0046872 | InterPro:IPR023329 |
| Symbol:LHCA6 | RefSeq:NP_173349.1 | ProteinID:OAP16970.1 | PFAM:PF00504 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000223 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005645 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0019018 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PANTHER:PTHR21649 | PANTHER:PTHR21649:SF5 | UniProt:Q8LCQ4 | SUPFAM:SSF103511 | EMBL:U03395 | UniParc:UPI000009C938 |
| SEG:seg | : | : | : | : | : |
Description
LHCA6Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCQ4]
Coordinates
chr1:+:6612630..6613972
Molecular Weight (calculated)
29940.9 Da
IEP (calculated)
6.243
GRAVY (calculated)
-0.106
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.