Factsheet for Bra016522.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96677	Canola	plastid	98.87	98.87
CDX83783	Canola	plastid	97.74	97.74
AT1G19150.1	Thale cress	plastid	87.59	86.3
VIT_11s0016g00730.t01	Wine grape	plastid	75.19	77.22
PGSC0003DMT400007514	Potato	plastid	75.19	76.92
Solyc12g009200.1.1	Tomato	nucleus, plastid	74.81	76.54
KRH37524	Soybean	plastid	73.31	75.0
KRH12566	Soybean	plastid	72.56	74.23
GSMUA_Achr9P18200_001	Banana	plastid	35.71	69.34
Os09t0439500-01	Rice	plastid	67.67	68.18
TraesCS5B01G210800.2	Wheat	cytosol, plastid	60.9	68.07
Zm00001d005814_P002	Maize	plastid	66.54	65.31
KXG35708	Sorghum	plastid	66.17	64.0
TraesCS5A01G213000.1	Wheat	plastid	65.41	63.74
TraesCS5D01G219100.1	Wheat	plastid	65.41	63.27
HORVU5Hr1G062240.1	Barley	plastid	65.79	61.4
Bra014433.1-P	Field mustard	plastid	53.76	55.86
Bra003451.1-P	Field mustard	plastid	53.76	55.21
Bra018144.1-P	Field mustard	plastid	39.47	41.67
Bra003198.1-P	Field mustard	plastid	33.46	36.93
Bra007109.1-P	Field mustard	plastid	33.46	36.93
Bra014048.1-P	Field mustard	mitochondrion, plastid	34.96	36.05
Bra027083.1-P	Field mustard	plastid	36.47	35.79
Bra031427.1-P	Field mustard	plastid	36.47	35.53
Bra026099.1-P	Field mustard	plastid	33.83	34.88
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	21.05	34.78
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	21.05	34.78
Bra026745.1-P	Field mustard	plastid	33.83	34.75
Bra016650.1-P	Field mustard	plastid	33.46	34.63
Bra022976.1-P	Field mustard	plastid	32.71	32.71
Bra005425.1-P	Field mustard	plastid	32.71	32.71
Bra030181.1-P	Field mustard	plastid	32.71	32.58
Bra010807.1-P	Field mustard	plastid	32.33	32.21
Bra030182.1-P	Field mustard	plastid	32.33	32.21
Bra038584.1-P	Field mustard	plastid	33.83	31.36
Bra013183.1-P	Field mustard	plastid	31.2	31.32
Bra033022.1-P	Field mustard	plastid	29.7	30.62
Bra039070.1-P	Field mustard	plastid	30.45	30.57
Bra025297.1-P	Field mustard	plastid	30.45	30.45
Bra028906.1-P	Field mustard	plastid	32.71	30.21
Bra004989.1-P	Field mustard	plastid	31.2	30.07
Bra029732.1-P	Field mustard	plastid	32.33	29.86
Bra000708.1-P	Field mustard	plastid	30.08	28.57
Bra002999.1-P	Field mustard	plastid	28.2	28.3
Bra037913.1-P	Field mustard	plastid	29.32	27.76
Bra008265.1-P	Field mustard	plastid	29.32	24.07

Protein Annotations

MapMan:1.1.4.1.6	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra016522	EnsemblPlants:Bra016522.1	EnsemblPlants:Bra016522.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009637	GO:GO:0009765	GO:GO:0009768	GO:GO:0009987	GO:GO:0010114
GO:GO:0010218	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	InterPro:IPR023329	UniProt:M4DJ44	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF5
SUPFAM:SSF103511	SignalP:SignalP-noTM	UniParc:UPI0002546F28	SEG:seg	:	:

Description

AT1G19150 (E=2e-129) LHCA6, LHCA2*1 | LHCA6; chlorophyll binding

Coordinates

chrA08:-:18866069..18867023

Molecular Weight (calculated)

29344.0 Da

IEP (calculated)

4.933

GRAVY (calculated)

-0.091

Length

266 amino acids

Sequence
(BLAST)

001: MALAIASALT STTLALSTSR VENGRGAFSS RVDGRTSQRL VVVRAGKEVS SVCEPLPPDR PMWFPGTSPP EWLDGSLPGD FGFDPLGLGS DPETLRWFAQ
101: AELIHSRWAM LAVTGILIPE CLERLGFIEN YSWYDAGSRE YFADSTTLFV VQLVLMGWAE GRRWADFIKP GSVDIEPQYP HKVNPKPDVG YPGGLWFDAM
201: MWGRGSPDPV MVMRTKEIKN GRLAMLAFVG FCFQANYSAS QDPIENLMAH LADPGHCNVF SAFTSQ

Best Arabidopsis Sequence Match ( AT1G19150.1 )
(BLAST)

001: MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH

Arabidopsis Description

LHCA6Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.