Factsheet for Bra026745.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52865	Canola	plastid	100.0	100.0
CDX81735	Canola	plastid	98.84	98.84
Bra026099.1-P	Field mustard	plastid	96.53	96.9
CDY35042	Canola	plastid	96.53	96.9
Bra016650.1-P	Field mustard	plastid	94.21	94.94
KRH10515	Soybean	mitochondrion, nucleus, plastid	82.63	82.31
KRH43915	Soybean	mitochondrion, nucleus, plastid	82.63	81.99
GSMUA_Achr10P...	Banana	unclear	47.1	81.88
VIT_12s0055g01110.t01	Wine grape	plastid	80.69	81.32
Solyc01g105050.2.1	Tomato	plastid	80.31	81.25
PGSC0003DMT400032790	Potato	plastid	79.54	80.47
Zm00001d026599_P001	Maize	plastid	76.06	79.44
PGSC0003DMT400032791	Potato	plastid	78.38	79.3
Solyc01g105030.2.1	Tomato	plastid	77.99	78.91
Zm00001d001857_P001	Maize	plastid	76.83	78.66
OQU82564	Sorghum	plastid	77.22	78.43
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	76.06	78.17
TraesCS2A01G342600.1	Wheat	plastid	76.83	78.04
TraesCS2B01G340300.1	Wheat	plastid	76.83	78.04
TraesCS2D01G320900.1	Wheat	plastid	76.83	78.04
Zm00001d032051_P001	Maize	mitochondrion	24.32	70.0
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	71.04	62.8
HORVU2Hr1G079910.1	Barley	cytosol	40.93	52.22
Zm00001d040012_P001	Maize	plastid	24.71	47.06
Zm00001d011218_P001	Maize	plastid	27.03	42.68
Bra014433.1-P	Field mustard	plastid	33.98	34.38
Bra003451.1-P	Field mustard	plastid	34.36	34.36
Bra016522.1-P	Field mustard	plastid	34.75	33.83
Bra003198.1-P	Field mustard	plastid	31.27	33.61
Bra014048.1-P	Field mustard	mitochondrion, plastid	33.2	33.33
Bra007109.1-P	Field mustard	plastid	30.89	33.2
Bra004989.1-P	Field mustard	plastid	33.98	31.88
Bra010807.1-P	Field mustard	plastid	32.05	31.09
Bra030181.1-P	Field mustard	plastid	31.66	30.71
Bra030182.1-P	Field mustard	plastid	31.27	30.34
Bra029732.1-P	Field mustard	plastid	33.2	29.86
Bra028906.1-P	Field mustard	plastid	33.2	29.86
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	18.53	29.81
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	18.53	29.81
Bra002999.1-P	Field mustard	plastid	30.5	29.81
Bra018144.1-P	Field mustard	plastid	28.96	29.76
Bra022976.1-P	Field mustard	plastid	30.5	29.7
Bra005425.1-P	Field mustard	plastid	30.5	29.7
Bra031427.1-P	Field mustard	plastid	29.73	28.21
Bra027083.1-P	Field mustard	plastid	28.96	27.68
Bra013183.1-P	Field mustard	plastid	27.41	26.79
Bra033022.1-P	Field mustard	plastid	26.64	26.74
Bra039070.1-P	Field mustard	plastid	27.03	26.42
Bra025297.1-P	Field mustard	plastid	27.03	26.32
Bra038584.1-P	Field mustard	plastid	27.41	24.74
Bra000708.1-P	Field mustard	plastid	26.64	24.64
Bra037913.1-P	Field mustard	plastid	25.87	23.84
Bra008265.1-P	Field mustard	plastid	27.41	21.91

Protein Annotations

MapMan:1.1.1.1.4	Gene3D:1.10.3460.10	ProteinID:AAT74560	ProteinID:AAT74560.1	EMBL:AY641832	EnsemblPlantsGene:Bra026745
EnsemblPlants:Bra026745.1	EnsemblPlants:Bra026745.1-P	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329
UniProt:M4ED85	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF28	SUPFAM:SSF103511	UniParc:UPI0002542CAF
SEG:seg	:	:	:	:	:

Description

AT1G15820 (E=3e-134) LHCB6, CP24 | LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6); chlorophyll binding

Coordinates

chrA09:+:33486601..33487526

Molecular Weight (calculated)

27736.3 Da

IEP (calculated)

9.330

GRAVY (calculated)

0.017

Length

259 amino acids

Sequence
(BLAST)

001: MAMAAVTGAV LSGLGSSFLS GGKRSITALG SGVGTGAARF GRKTLIVAAA AAQPKKSWIP AVKGGGNFLD PEWLDGSLPG DFGFDPLGLG KDPAFLKWYR
101: EAELIHGRWA MAAVLGIFVG QAWSGVPWFE AGADPRAIAP FSFGSLLGTQ LLLMGWVESK RWVDFFNPDS QSVEWATPWS RTAENFANYT GDQGYPGGRF
201: FDPLGLAGKT RDGVYEPDRE KLERLKLAEI KHSRLAMLAM LIFYFEAGQG KTPLGALGL

Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL

Arabidopsis Description

LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.