Factsheet for VIT_12s0055g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83967	Canola	extracellular, vacuole	8.56	95.65
KRH10515	Soybean	mitochondrion, nucleus, plastid	89.49	88.46
KRH43915	Soybean	mitochondrion, nucleus, plastid	89.49	88.12
KRH58296	Soybean	plastid	82.49	87.24
PGSC0003DMT400032791	Potato	plastid	85.99	86.33
GSMUA_Achr10P...	Banana	unclear	49.42	85.23
PGSC0003DMT400032790	Potato	plastid	84.44	84.77
KRH42185	Soybean	mitochondrion, nucleus, plastid	84.44	84.11
Solyc01g105030.2.1	Tomato	plastid	83.66	83.98
Zm00001d026599_P001	Maize	plastid	80.54	83.47
Solyc01g105050.2.1	Tomato	plastid	82.49	82.81
OQU82564	Sorghum	plastid	82.1	82.75
Bra026099.1-P	Field mustard	plastid	82.49	82.17
CDY33376	Canola	plastid	82.49	82.17
CDY35042	Canola	plastid	82.1	81.78
Zm00001d001857_P001	Maize	plastid	79.77	81.03
CDY52865	Canola	plastid	81.32	80.69
Bra026745.1-P	Field mustard	plastid	81.32	80.69
CDX81735	Canola	plastid	80.93	80.31
AT1G15820.1	Thale cress	plastid	80.16	79.84
CDX96833	Canola	plastid	80.16	79.54
Bra016650.1-P	Field mustard	plastid	78.6	78.6
TraesCS2D01G320900.1	Wheat	plastid	77.82	78.43
TraesCS2B01G340300.1	Wheat	plastid	77.82	78.43
TraesCS2A01G342600.1	Wheat	plastid	77.82	78.43
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	76.26	77.78
Zm00001d032051_P001	Maize	mitochondrion	24.12	68.89
CDX83966	Canola	plastid	59.92	67.54
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	70.82	62.12
HORVU2Hr1G079910.1	Barley	cytosol	40.08	50.74
Zm00001d040012_P001	Maize	plastid	24.51	46.32
Zm00001d011218_P001	Maize	plastid	28.02	43.9
VIT_17s0000g06350.t01	Wine grape	plastid	35.02	35.71
VIT_18s0001g10550.t01	Wine grape	plastid	36.19	35.23
VIT_11s0016g00730.t01	Wine grape	plastid	34.63	34.36
VIT_13s0019g04140.t01	Wine grape	plastid	30.74	32.38
VIT_01s0010g03620.t01	Wine grape	plastid	33.85	32.1
VIT_19s0014g00160.t01	Wine grape	plastid	31.13	29.96
VIT_12s0028g00320.t01	Wine grape	plastid	31.13	29.63
VIT_10s0003g02890.t01	Wine grape	plastid	29.18	28.41
VIT_10s0003g02900.t01	Wine grape	plastid	28.79	28.03
VIT_07s0005g02220.t01	Wine grape	plastid	28.02	27.38
VIT_15s0024g00040.t01	Wine grape	plastid	29.18	27.37
VIT_19s0014g03660.t01	Wine grape	plastid	28.02	27.07
VIT_00s0181g00200.t01	Wine grape	plastid	28.02	26.77
VIT_00s0181g00180.t01	Wine grape	plastid	28.02	26.77
VIT_08s0007g02190.t01	Wine grape	plastid	33.85	25.44
VIT_12s0057g00630.t01	Wine grape	plastid	26.07	25.28
VIT_18s0122g00430.t01	Wine grape	plastid	30.35	23.57
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	27.24	17.41

Protein Annotations

MapMan:1.1.1.1.4	Gene3D:1.10.3460.10	EntrezGene:100241887	wikigene:100241887	UniProt:A5ASW8	EMBL:AM434327
ProteinID:CAN71620	ProteinID:CAN71620.1	ProteinID:CCB46170	ProteinID:CCB46170.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EMBL:FN595228	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EntrezGene:LOC100241887	wikigene:LOC100241887	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF28	SUPFAM:SSF103511	TIGR:TC57521	TIGR:TC58562	TIGR:TC66264
UniParc:UPI000151F5CB	ArrayExpress:VIT_12s0055g01110	EnsemblPlantsGene:VIT_12s0055g01110	EnsemblPlants:VIT_12s0055g01110.t01	unigene:Vvi.1334	RefSeq:XP_002263201
RefSeq:XP_002263201.1	SEG:seg	:	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A5ASW8]

Coordinates

chr12:-:14705491..14706714

Molecular Weight (calculated)

27217.9 Da

IEP (calculated)

8.813

GRAVY (calculated)

0.160

Length

257 amino acids

Sequence
(BLAST)

001: MAATSAAVLN GLGSPFLTGG KRSQSLLSAG VAAKAGAAVP APRRLIVVAA APKKSWLPGV KAGGNLVDPE WLDGSLPGDY GFDPLGLGKD PAFLKWYREA
101: ELIHGRWAMA AVVGIFVGQA WSGIPWFEAG AAPGAVAPFS FGTLLGTQLL LMGWVESKRW VDFFNPESQS VEWATPWSRT AENFANATGE QGYPGGKFFD
201: PLSLAGTIKD GVYIPDVEKL ERLKLAEIKH ARIAMLAMLI FYFEAGQGKT PLGALGL

Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL

Arabidopsis Description

LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.