Factsheet for VIT_19s0014g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	57.68	96.25
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	57.68	96.25
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	93.26	93.26
VIT_10s0003g02890.t01	Wine grape	plastid	91.01	92.05
VIT_10s0003g02900.t01	Wine grape	plastid	90.64	91.67
VIT_12s0028g00320.t01	Wine grape	plastid	92.13	91.11
TraesCS6B01G122700.1	Wheat	mitochondrion, plastid	72.28	91.04
TraesCS6B01G122500.1	Wheat	cytosol, extracellular, plastid	54.31	90.62
TraesCS5B01G463100.1	Wheat	plastid	90.26	90.6
TraesCS5D01G464700.1	Wheat	plastid	89.89	90.23
TraesCS1A01G403300.1	Wheat	plastid	89.51	89.85
TraesCS5B01G463000.1	Wheat	plastid	89.51	89.85
TraesCS1D01G411600.1	Wheat	plastid	89.51	89.85
TraesCS1B01G432700.1	Wheat	plastid	89.51	89.85
TraesCS1D01G375100.1	Wheat	plastid	89.14	89.81
TraesCSU01G167700.1	Wheat	plastid	89.14	89.81
TraesCS1B01G317500.1	Wheat	plastid	51.31	89.54
TraesCS1B01G433300.1	Wheat	plastid	89.14	89.47
TraesCS5B01G462800.1	Wheat	plastid	89.14	89.47
TraesCS1D01G411300.1	Wheat	plastid	89.14	89.47
TraesCS5A01G454300.1	Wheat	plastid	89.14	89.47
TraesCS5D01G464900.1	Wheat	plastid	89.14	89.47
TraesCS5A01G454200.1	Wheat	plastid	89.14	89.47
Os01t0720500-01	Rice	plastid	88.76	89.43
TraesCS6D01G088800.1	Wheat	plastid	88.76	89.1
TraesCS1A01G403800.1	Wheat	plastid	88.76	89.1
TraesCSU01G250000.1	Wheat	plastid	88.76	89.1
TraesCS1D01G374900.1	Wheat	plastid	88.39	89.06
Zm00001d011285_P001	Maize	plastid	88.02	89.02
VIT_07s0005g02220.t01	Wine grape	plastid	87.64	88.97
TraesCS5D01G464800.1	Wheat	plastid	88.39	88.72
EES01022	Sorghum	plastid	88.02	88.68
TraesCS1B01G388200.1	Wheat	plastid	88.02	88.68
TraesCS7B01G103300.1	Wheat	plastid	88.02	88.35
TraesCS6A01G094600.1	Wheat	plastid	84.64	88.28
OQU87124	Sorghum	plastid	87.27	88.26
TraesCS6A01G093700.1	Wheat	plastid	87.64	87.97
TraesCS6A01G094100.1	Wheat	plastid	87.64	87.97
TraesCS6A01G094300.1	Wheat	plastid	87.64	87.97
TraesCS7D01G199400.1	Wheat	plastid	87.64	87.97
TraesCS6B01G122800.1	Wheat	plastid	87.64	87.97
TraesCS1B01G388500.1	Wheat	plastid	87.27	87.92
Zm00001d044401_P001	Maize	plastid	86.89	87.88
Zm00001d044402_P001	Maize	plastid	86.89	87.88
Zm00001d044399_P001	Maize	plastid	86.89	87.88
PGSC0003DMT400034902	Potato	plastid	43.07	87.79
TraesCS7B01G103400.1	Wheat	plastid	87.27	87.59
TraesCS5A01G350600.1	Wheat	plastid	86.89	87.55
TraesCS5D01G357600.1	Wheat	plastid	86.89	87.55
Zm00001d044396_P001	Maize	plastid	86.52	87.5
TraesCS1D01G375000.1	Wheat	plastid	78.28	87.45
TraesCS6D01G088600.1	Wheat	plastid	86.89	87.22
TraesCS7A01G238400.1	Wheat	plastid	86.89	87.22
TraesCS1B01G388300.1	Wheat	plastid	86.52	87.17
TraesCS5B01G353200.1	Wheat	plastid	86.52	87.17
TraesCS5B01G462900.1	Wheat	plastid	66.29	86.76
TraesCS6D01G088700.1	Wheat	plastid	74.16	86.09
TraesCS6B01G122600.1	Wheat	plastid	84.64	84.96
TraesCS7D01G199500.1	Wheat	plastid	84.64	84.96
TraesCS7A01G237100.1	Wheat	plastid	83.9	84.21
VIT_12s0057g00630.t01	Wine grape	plastid	78.28	78.87
TraesCS6A01G094500.1	Wheat	plastid	88.02	77.05
TraesCS1D01G375200.1	Wheat	plastid	41.95	72.73
TraesCS6A01G094200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	88.02	71.87
TraesCS6A01G094400.1	Wheat	plastid	88.02	70.57
VIT_19s0014g03660.t01	Wine grape	plastid	68.91	69.17
VIT_00s0181g00180.t01	Wine grape	plastid	69.66	69.14
VIT_00s0181g00200.t01	Wine grape	plastid	69.66	69.14
KXG33266	Sorghum	extracellular	48.31	55.84
VIT_13s0019g04140.t01	Wine grape	plastid	36.33	39.75
VIT_11s0016g00730.t01	Wine grape	plastid	34.46	35.52
VIT_18s0122g00430.t01	Wine grape	plastid	43.07	34.74
VIT_15s0024g00040.t01	Wine grape	plastid	35.58	34.67
VIT_01s0010g03620.t01	Wine grape	plastid	34.83	34.32
VIT_17s0000g06350.t01	Wine grape	plastid	31.46	33.33
VIT_18s0001g10550.t01	Wine grape	plastid	31.46	31.82
VIT_12s0055g01110.t01	Wine grape	plastid	29.96	31.13
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	45.32	30.1
VIT_08s0007g02190.t01	Wine grape	plastid	34.83	27.19

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:100245214	wikigene:100245214	UniProt:A5C4U9	EMBL:AM482385
ProteinID:CAN73057	ProteinID:CAN73057.1	ProteinID:CCB46185	ProteinID:CCB46185.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EMBL:FN595229	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EntrezGene:LOC100245214	wikigene:LOC100245214	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF55	SUPFAM:SSF103511	TIGR:TC57214	UniParc:UPI00015228F7	ArrayExpress:VIT_19s0014g00160
EnsemblPlantsGene:VIT_19s0014g00160	EnsemblPlants:VIT_19s0014g00160.t01	unigene:Vvi.10591	RefSeq:XP_002285646	RefSeq:XP_002285646.1	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A5C4U9]

Coordinates

chr19:-:150633..151462

Molecular Weight (calculated)

28276.8 Da

IEP (calculated)

5.098

GRAVY (calculated)

0.010

Length

267 amino acids

Sequence
(BLAST)

001: MAASTMALSS PSLAGKALKL APSASDLLGE GRVTMRKTGG RAKPVSSGSP WYGTDRVKYL GPFSGEPPSY LTGEFPGDYG WDTAGLSADP ETFAKNRELE
101: VIHCRWAMLG ALGCVFPELL ARNGVKFGEA VWFKAGAQIF SEGGLDYLGN PNLVHAQSIL AIWASQVILM GAVEGYRIGG GPLGEVVDPL YPGGSFDPLG
201: LADDPEAFAE LKVKEIKNGR LAMFSMFGFF VQAIVTGKGP LENLADHLAD PVNNNAWAYA TNFVPGK

Best Arabidopsis Sequence Match ( AT1G29930.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.3Chlorophyll a-b binding protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P04778]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.