CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87124	Sorghum	plastid	98.49	98.86
Zm00001d011285_P001	Maize	plastid	97.36	97.73
EER97145	Sorghum	extracellular, vacuole	62.64	97.08
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	48.3	96.24
Os01t0720500-01	Rice	plastid	93.58	93.58
EER97143	Sorghum	plastid	90.57	91.6
TraesCS5B01G353200.1	Wheat	plastid	91.32	91.32
EES18693	Sorghum	plastid	91.32	91.32
TraesCS5A01G350600.1	Wheat	plastid	90.94	90.94
TraesCS5D01G357600.1	Wheat	plastid	90.94	90.94
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	91.32	90.64
HORVU5Hr1G124160.1	Barley	plastid	90.57	90.23
HORVU5Hr1G087250.1	Barley	plastid	90.57	90.23
HORVU1Hr1G088880.1	Barley	plastid	89.43	89.1
TraesCS1B01G432700.1	Wheat	plastid	89.43	89.1
TraesCS1A01G403300.1	Wheat	plastid	89.43	89.1
TraesCS1D01G411300.1	Wheat	plastid	89.06	88.72
VIT_07s0005g02220.t01	Wine grape	plastid	87.55	88.21
VIT_19s0014g00160.t01	Wine grape	plastid	88.68	88.02
VIT_10s0003g02900.t01	Wine grape	plastid	86.79	87.12
VIT_10s0003g02890.t01	Wine grape	plastid	86.79	87.12
VIT_12s0028g00320.t01	Wine grape	plastid	86.04	84.44
GSMUA_Achr4P07890_001	Banana	plastid	50.19	83.65
HORVU1Hr1G088870.2	Barley	plastid	89.43	82.01
PGSC0003DMT400034902	Potato	plastid	39.25	79.39
EER93861	Sorghum	plastid	75.47	76.34
OQU90095	Sorghum	plastid	67.92	67.16
KXG33266	Sorghum	extracellular	49.81	57.14
EES09551	Sorghum	plastid	46.42	43.62
EER96508	Sorghum	plastid	44.15	37.26
EES04597	Sorghum	plastid	33.96	36.73
KXG36552	Sorghum	plastid	34.34	34.6
EES07574	Sorghum	plastid	33.96	33.83
KXG20345	Sorghum	plastid	33.58	33.58
KXG35708	Sorghum	plastid	33.21	32.0
EER99537	Sorghum	plastid	34.72	31.94
KXG25214	Sorghum	plastid	30.19	31.87
OQU82564	Sorghum	plastid	26.79	27.84

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:8082204	UniProt:C5XQ83	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlants:EES01022	ProteinID:EES01022	ProteinID:EES01022.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768
GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	EnsemblPlantsGene:SORBI_3003G209900	SUPFAM:SSF103511	unigene:Sbi.17772	UniParc:UPI0001A849F7
RefSeq:XP_002455902.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:54219404..54220470

Molecular Weight (calculated)

28183.7 Da

IEP (calculated)

5.098

GRAVY (calculated)

0.035

Length

265 amino acids

Sequence
(BLAST)

001: MAGATMALTS RALVGKPATT STRDVFGEGR ITMRKTAAKP KPAASGSPWY GADRVLYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FAKNRELEVI
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LIHAQSILAI WACQVVLMGA VEGYRVAGGP LGEVVDPLYP GGSFDPLGLA
201: DDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAYATN FVPGK

Best Arabidopsis Sequence Match ( AT2G34420.1 )
(BLAST)

001: MASSTMALSS PAFAGKAVKP AASDVLGSGR VTMRKTVAKP KGPSGSPWYG SDRVKYLGPF SGEPPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH
101: SRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL VHAQSILAIW ATQVILMGAV EGYRVAGDGP LGEAEDLLYP GGSFDPLGLA
201: TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK

Arabidopsis Description

LHB1B2Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39141]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.