CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039040_P001	Maize	plastid	99.25	98.87
Zm00001d009589_P001	Maize	plastid	98.49	98.49
EER97145	Sorghum	extracellular, vacuole	63.02	97.66
Os01t0600900-02	Rice	plastid	92.83	94.25
Os09t0346500-04	Rice	plastid	92.83	92.83
TraesCS5A01G454400.1	Wheat	mitochondrion, plastid	58.49	92.81
EER97143	Sorghum	plastid	91.7	92.75
EES01022	Sorghum	plastid	91.32	91.32
OQU87124	Sorghum	plastid	90.19	90.53
KRH08672	Soybean	mitochondrion, nucleus, plastid	89.43	89.77
KRH08669	Soybean	nucleus, plastid	89.06	89.39
KRH08676	Soybean	nucleus, plastid	89.06	89.39
KRH42317	Soybean	mitochondrion, nucleus, plastid	88.3	88.97
KRH58441	Soybean	mitochondrion, plastid	87.92	88.59
KRH70280	Soybean	plastid	74.34	79.12
EER93861	Sorghum	plastid	76.6	77.48
OQU90095	Sorghum	plastid	67.55	66.79
KXG33266	Sorghum	extracellular	49.81	57.14
EES09551	Sorghum	plastid	46.04	43.26
EES04597	Sorghum	plastid	34.72	37.55
EER96508	Sorghum	plastid	43.77	36.94
KXG36552	Sorghum	plastid	35.47	35.74
KXG20345	Sorghum	plastid	33.58	33.58
EES07574	Sorghum	plastid	33.58	33.46
KXG35708	Sorghum	plastid	33.96	32.73
KXG25214	Sorghum	plastid	30.94	32.67
EER99537	Sorghum	plastid	35.09	32.29
OQU82564	Sorghum	plastid	26.04	27.06

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:8074608	UniProt:C5YVW5	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlants:EES18693	ProteinID:EES18693	ProteinID:EES18693.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768
GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	EnsemblPlantsGene:SORBI_3009G234600	SUPFAM:SSF103511	unigene:Sbi.14044	UniParc:UPI0001A88E4D
RefSeq:XP_002440263.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:57389228..57390570

Molecular Weight (calculated)

28040.5 Da

IEP (calculated)

4.904

GRAVY (calculated)

0.080

Length

265 amino acids

Sequence
(BLAST)

001: MASSTMALSS TAFAGKAVNV PSSLFGEARV TMRKTAAKAK PAAASGSPWY GPDRVLYLGP LSGEPPSYLT GEFPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LIHAQSILAI WACQVVLMGA VEGYRIAGGP LGEVVDPLYP GGSFDPLGLA
201: DDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAYATN FVPGK

Best Arabidopsis Sequence Match ( AT2G34420.1 )
(BLAST)

001: MASSTMALSS PAFAGKAVKP AASDVLGSGR VTMRKTVAKP KGPSGSPWYG SDRVKYLGPF SGEPPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH
101: SRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL VHAQSILAIW ATQVILMGAV EGYRVAGDGP LGEAEDLLYP GGSFDPLGLA
201: TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK

Arabidopsis Description

LHB1B2Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39141]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.