CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018157_P001	Maize	plastid	92.86	91.82
Os02t0764500-01	Rice	plastid	81.2	82.76
TraesCS6B01G350500.1	Wheat	plastid	77.07	79.77
TraesCS6D01G299200.1	Wheat	plastid	75.56	79.13
TraesCS6A01G319700.1	Wheat	plastid	75.56	79.13
TraesCS6B01G312900.1	Wheat	plastid	39.1	71.72
GSMUA_Achr7P13020_001	Banana	plastid	69.55	68.01
VIT_18s0001g10550.t01	Wine grape	plastid	67.29	67.8
Solyc07g022900.2.1	Tomato	plastid	63.53	64.5
CDY43213	Canola	mitochondrion, plastid	62.03	63.95
AT1G45474.2	Thale cress	mitochondrion	61.28	63.67
Bra014048.1-P	Field mustard	mitochondrion, plastid	61.65	63.57
CDY17055	Canola	mitochondrion, plastid	61.65	63.57
KRH51989	Soybean	nucleus	66.17	61.75
PGSC0003DMT400011381	Potato	plastid	54.89	54.89
KRH61286	Soybean	mitochondrion	39.85	48.4
KXG36552	Sorghum	plastid	42.11	42.59
KXG25214	Sorghum	plastid	39.85	42.23
KXG20345	Sorghum	plastid	40.23	40.38
EER97145	Sorghum	extracellular, vacuole	25.56	39.77
KXG35708	Sorghum	plastid	40.6	39.27
OQU82564	Sorghum	plastid	36.84	38.43
EER97143	Sorghum	plastid	33.83	34.35
EES01022	Sorghum	plastid	33.83	33.96
EES04597	Sorghum	plastid	31.2	33.88
EES18693	Sorghum	plastid	33.46	33.58
OQU87124	Sorghum	plastid	32.71	32.95
EER93861	Sorghum	plastid	31.2	31.68
OQU90095	Sorghum	plastid	31.2	30.97
EER99537	Sorghum	plastid	31.95	29.51
EES09551	Sorghum	plastid	30.83	29.08
EER96508	Sorghum	plastid	33.46	28.34
KXG33266	Sorghum	extracellular	21.8	25.11

Protein Annotations

MapMan:1.1.4.1.5	Gene3D:1.10.3460.10	EntrezGene:8075198	UniProt:C5XSU5	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlants:EES07574	ProteinID:EES07574	ProteinID:EES07574.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009416
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009644	GO:GO:0009645	GO:GO:0009765	GO:GO:0009768	GO:GO:0009782
GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	GO:GO:0042803	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF23	EnsemblPlantsGene:SORBI_3004G308700	SUPFAM:SSF103511	unigene:Sbi.21
UniParc:UPI0001A86141	RefSeq:XP_002454598.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:64612218..64614545

Molecular Weight (calculated)

28499.1 Da

IEP (calculated)

7.088

GRAVY (calculated)

-0.038

Length

266 amino acids

Sequence
(BLAST)

001: MASTVTAANS HGSVLRTHTA PSSRQLAGWS SRRTLAMPAH HAPSPRARVV AVRAAGTQRP TWLPGLDPPP HLDGTLPGDF GFDPLGLGED PASLKWYVQA
101: ELVHCRFAMA GVAGILFTDL LRVSGNSDLP VWFEAGAAKF EFANTTALFF VQLLLMGFAE TKRYMDFKNP GSQAEEGTFI GLEAALAGQQ PGYPGGPLFN
201: PLGLAKDIEN AHEEKLKEIK NGRLAMVAML GFMVQASVTH AGPIDNLLTH LSDPFNKNII HAFSSS

Best Arabidopsis Sequence Match ( AT1G45474.2 )
(BLAST)

001: MAVVLRGGIT GGFLHHRRDA SSVITRRISS VKAAGGGINP TVAVERATWL PGLNPPPYLD GNLAGDYGFD PLGLGEDPES LKWYVQAELV HSRFAMLGVA
101: GILFTDLLRT TGIRNLPVWY EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG YPGGPLLNPL GLAKDVQNAH
201: DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS NPWHKTIIQT LFTSTS

Arabidopsis Description

LHCA5Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C639]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.