CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033136_P001	Maize	plastid	98.09	98.85
Zm00001d033132_P001	Maize	plastid	98.09	98.85
Os03t0592500-01	Rice	extracellular	95.04	94.68
TraesCS5D01G329200.1	Wheat	plastid	91.6	91.25
TraesCS5B01G322900.1	Wheat	plastid	91.6	91.25
TraesCS5A01G322500.1	Wheat	plastid	91.6	91.25
EER97145	Sorghum	extracellular, vacuole	57.25	87.72
VIT_12s0057g00630.t01	Wine grape	plastid	88.17	87.17
PGSC0003DMT400015740	Potato	plastid	87.79	86.79
GSMUA_Achr4P33040_001	Banana	plastid, unclear	87.02	86.36
Solyc07g047850.2.1	Tomato	plastid	87.02	86.04
KRH74003	Soybean	nucleus, plastid	87.02	86.04
KRH14122	Soybean	nucleus, plastid	87.02	86.04
PGSC0003DMT400010985	Potato	plastid	86.26	85.28
Solyc12g006140.1.1	Tomato	plastid	85.88	84.91
CDY15050	Canola	plastid	85.11	84.15
CDX93077	Canola	plastid	84.73	83.77
Bra013183.1-P	Field mustard	plastid	84.73	83.77
AT2G05070.1	Thale cress	plastid	84.35	83.4
CDY20039	Canola	plastid	83.97	83.02
Bra039070.1-P	Field mustard	plastid	83.97	83.02
CDY13732	Canola	plastid	83.97	82.71
Bra025297.1-P	Field mustard	plastid	83.97	82.71
CDY00149	Canola	plastid	83.97	82.71
CDY49770	Canola	plastid	83.97	82.71
CDY03989	Canola	plastid	83.59	82.33
CDX83726	Canola	plastid	83.21	81.95
Bra033022.1-P	Field mustard	plastid	78.63	79.84
Zm00001d013766_P001	Maize	plastid	42.75	77.78
EER97143	Sorghum	plastid	76.72	76.72
EES18693	Sorghum	plastid	77.48	76.6
EES01022	Sorghum	plastid	76.34	75.47
OQU87124	Sorghum	plastid	75.57	75.0
AT3G27690.2	Thale cress	golgi, plastid	84.73	74.5
OQU90095	Sorghum	plastid	72.52	70.9
HORVU5Hr1G082420.1	Barley	plastid	91.6	69.97
AT2G05100.2	Thale cress	plastid	77.1	63.72
KXG33266	Sorghum	extracellular	44.27	50.22
EES09551	Sorghum	plastid	44.66	41.49
EES04597	Sorghum	plastid	32.82	35.1
EER96508	Sorghum	plastid	40.46	33.76
KXG36552	Sorghum	plastid	32.06	31.94
KXG20345	Sorghum	plastid	32.06	31.7
KXG25214	Sorghum	plastid	30.15	31.47
EES07574	Sorghum	plastid	31.68	31.2
EER99537	Sorghum	plastid	31.68	28.82
KXG35708	Sorghum	plastid	30.15	28.73
OQU82564	Sorghum	plastid	26.34	27.06

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:8062994	UniProt:C5WTC1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlants:EER93861	ProteinID:EER93861	ProteinID:EER93861.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768
GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF33	EnsemblPlantsGene:SORBI_3001G177000	SUPFAM:SSF103511	unigene:Sbi.17759	UniParc:UPI0001A82CDB
RefSeq:XP_002466863.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:14892135..14893503

Molecular Weight (calculated)

27979.3 Da

IEP (calculated)

5.064

GRAVY (calculated)

0.008

Length

262 amino acids

Sequence
(BLAST)

001: MAASALHQTT SFLGQALVSR PAAAAADAGG RITMRRTVKS APQSIWYGPD RPKYLGPFSE QTPSYLTGEF PGDYGWDTAG LSADPETFAR NRELEVIHSR
101: WAMLGALGCV FPEILAKNGV KFGEAVWFKA GAQIFSEGGL DYLGNPNLVH AQSILAIWAC QVVLMGFVEG YRVGGGPLGE GLDKVYPGGA FDPLGLADDP
201: DTAAELKVKE LKNGRLAMFS MFGFFVQAIV TGKGPIENLF DHVADPVANN AWAYATNFVP GN

Best Arabidopsis Sequence Match ( AT3G27690.2 )
(BLAST)

001: MNTLLYKRRL QFNNISFSLT SFLFLCSCLE EAMATSAIQH SSFAGQTTLK PSNDLLRKIG ASNGGGRIIM RRTVKSTPQS IWYGPDRPKY LGPFSENTPS
101: YLTGEYPGDY GWDTAGLSAD PETFAKNREL EVIHSRWAML GALGCTFPEI LSKNGVKFGE AVWFKAGSQI FSEGGLDYLG NPNLIHAQSI LAIWACQVVL
201: MGFIEGYRIG GGPLGEGLDP LYPGGAFDPL NLAEDPEAFS ELKVKELKNG RLAMFSMFGF FVQAIVTGKG PIENLFDHIA DPVANNAWAY ATNFVPGK

Arabidopsis Description

LHCB2.4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1I9LMB4]
SUBAcon: [golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.