CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048998_P001	Maize	plastid	97.87	97.53
Os11t0242800-01	Rice	plastid	92.2	91.87
TraesCS4D01G086400.1	Wheat	plastid	88.65	87.41
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	88.65	87.41
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	88.65	86.81
GSMUA_Achr6P12670_001	Banana	plasma membrane	79.79	80.65
AT4G10340.1	Thale cress	plastid	78.37	78.93
Bra037913.1-P	Field mustard	plastid	78.01	78.29
GSMUA_Achr3P02780_001	Banana	plastid	80.5	78.28
CDX90755	Canola	plastid	77.66	78.21
CDY60092	Canola	plastid	77.66	77.94
HORVU4Hr1G015260.2	Barley	plastid	79.43	77.78
Bra000708.1-P	Field mustard	plastid	76.95	77.5
CDY05098	Canola	plastid	76.6	77.14
PGSC0003DMT400068129	Potato	plastid	77.66	76.84
Solyc06g063370.2.1	Tomato	plastid	77.66	76.57
CDX86864	Canola	plastid	55.32	74.64
GSMUA_Achr10P...	Banana	plastid	75.89	74.31
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	80.5	56.47
EER97145	Sorghum	extracellular, vacuole	29.79	49.12
EER97143	Sorghum	plastid	43.26	46.56
EES01022	Sorghum	plastid	43.62	46.42
OQU87124	Sorghum	plastid	43.26	46.21
EES18693	Sorghum	plastid	43.26	46.04
EER93861	Sorghum	plastid	41.49	44.66
OQU90095	Sorghum	plastid	39.72	41.79
KRH58809	Soybean	mitochondrion	44.68	39.75
EER96508	Sorghum	plastid	38.3	34.39
KXG20345	Sorghum	plastid	31.91	33.96
KXG33266	Sorghum	extracellular	27.3	33.33
KXG36552	Sorghum	plastid	29.43	31.56
EES04597	Sorghum	plastid	27.3	31.43
EER99537	Sorghum	plastid	31.91	31.25
EES07574	Sorghum	plastid	29.08	30.83
KXG25214	Sorghum	plastid	26.6	29.88
KXG35708	Sorghum	plastid	28.01	28.73
OQU82564	Sorghum	plastid	23.4	25.88

Protein Annotations

MapMan:1.1.1.1.3	Gene3D:1.10.3460.10	EntrezGene:8057152	UniProt:C5Y7U2	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlants:EES09551	ProteinID:EES09551	ProteinID:EES09551.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009517
GO:GO:0009522	GO:GO:0009523	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009637	GO:GO:0009765	GO:GO:0009768	GO:GO:0009783	GO:GO:0009941
GO:GO:0009987	GO:GO:0010114	GO:GO:0010196	GO:GO:0010207	GO:GO:0010218	GO:GO:0010287
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0019904	GO:GO:0031409	GO:GO:0042651	InterPro:IPR023329	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF53	EnsemblPlantsGene:SORBI_3005G087000	SUPFAM:SSF103511	unigene:Sbi.14049	UniParc:UPI0001A868F1
RefSeq:XP_002450563.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:12276884..12280209

Molecular Weight (calculated)

30132.1 Da

IEP (calculated)

5.134

GRAVY (calculated)

-0.013

Length

282 amino acids

Sequence
(BLAST)

001: MALAPSKILG TQLNFAGSSR YATAAPTAGA QKIVSLFSKK PAQKPKPVPV SSSSPDISDE LAKWYGPDRR IYLPDGLLDR SEVPEYLTGE VPGDYGYDPF
101: GLGKKPEDFA KYQAYELIHA RWAMLGAAGA VIPEACNKFG ANCGPEAVWF KTGALLLDGN TLNYFGNSIP INLVVAVIAE VVLVGGAEYY RIINGLDLED
201: KLHPGGPFDP LGLASDPDQA AILKVKEIKN GRLAMFSMLA FFIQAYVTGE GPVENLAKHL SDPFGNNLLT VISGAAERTP SL

Best Arabidopsis Sequence Match ( AT4G10340.1 )
(BLAST)

001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL

Arabidopsis Description

LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.