CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050403_P001	Maize	plastid	95.22	97.95
Os08t0435900-01	Rice	mitochondrion	88.45	90.98
TraesCS5B01G227900.1	Wheat	plastid	83.27	85.31
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	83.27	85.31
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	82.87	84.9
HORVU5Hr1G066280.1	Barley	plastid	82.87	84.9
GSMUA_Achr2P14960_001	Banana	plastid	80.88	80.88
GSMUA_Achr4P24090_001	Banana	unclear	80.08	79.76
KRH63318	Soybean	plastid	79.68	79.37
KRH54568	Soybean	nucleus, plastid	79.68	79.37
VIT_17s0000g06350.t01	Wine grape	plastid	79.28	78.97
Solyc06g069730.2.1	Tomato	plastid	78.09	78.4
PGSC0003DMT400083158	Potato	plastid	78.09	78.4
Solyc03g115900.2.1	Tomato	plastid	77.69	77.69
PGSC0003DMT400050232	Potato	plastid	77.69	77.69
Bra018144.1-P	Field mustard	plastid	77.29	76.98
CDX99044	Canola	plastid	77.29	76.98
CDY47410	Canola	plastid	77.29	76.98
AT3G47470.1	Thale cress	plastid	76.1	76.1
KXG36552	Sorghum	plastid	49.4	47.15
KXG35708	Sorghum	plastid	45.42	41.45
EES07574	Sorghum	plastid	42.23	39.85
EES04597	Sorghum	plastid	37.85	38.78
KXG20345	Sorghum	plastid	40.64	38.49
EER97145	Sorghum	extracellular, vacuole	22.71	33.33
OQU82564	Sorghum	plastid	33.07	32.55
OQU90095	Sorghum	plastid	33.07	30.97
EES18693	Sorghum	plastid	32.67	30.94
EER99537	Sorghum	plastid	34.66	30.21
EES01022	Sorghum	plastid	31.87	30.19
EER93861	Sorghum	plastid	31.47	30.15
OQU87124	Sorghum	plastid	31.08	29.55
EER97143	Sorghum	plastid	30.68	29.39
EES09551	Sorghum	plastid	29.88	26.6
EER96508	Sorghum	plastid	31.08	24.84
KXG33266	Sorghum	extracellular	20.72	22.51

Protein Annotations

MapMan:1.1.4.1.4	Gene3D:1.10.3460.10	UniProt:A0A1B6PHP7	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	EnsemblPlants:KXG25214	ProteinID:KXG25214	ProteinID:KXG25214.1	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF4	EnsemblPlantsGene:SORBI_3007G136900	SUPFAM:SSF103511	UniParc:UPI000220716B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:56439996..56442238

Molecular Weight (calculated)

27341.5 Da

IEP (calculated)

7.162

GRAVY (calculated)

-0.137

Length

251 amino acids

Sequence
(BLAST)

001: MASVTARAPV AALRPSSASS LKSSSSSSAF LGHSSRLGRT ASPTTRRSLK AEAKGEWLPG LPSPAYLDGS LPGDNGFDPL GLAEDPENLR WFVQAELVNG
101: RWAMLGVAGM LIPEVLTKAG LINAPQWYDA GKSEYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKSYSLPP HECGYPGSVF NPLNFAPTLE
201: AKEKELANGR LAMLAFLGFL IQHNVTGKGP FDNLLQHLSD PWHNTIIQTL S

Best Arabidopsis Sequence Match ( AT3G47470.1 )
(BLAST)

001: MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N

Arabidopsis Description

LHCA4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VEE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.