CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015385_P001	Maize	plastid	97.55	97.55
Os06t0320500-01	Rice	plastid	91.84	93.36
TraesCS7A01G227100.1	Wheat	plastid	92.24	91.5
TraesCS7B01G192500.1	Wheat	plastid	91.43	91.43
TraesCS7D01G227300.1	Wheat	plastid	91.43	91.43
GSMUA_Achr2P06350_001	Banana	unclear	78.37	79.67
HORVU7Hr1G046320.2	Barley	plastid	91.43	78.6
VIT_13s0019g04140.t01	Wine grape	plastid	77.96	78.28
Bra003198.1-P	Field mustard	plastid	75.92	77.18
CDX67613	Canola	plastid	75.92	77.18
CDY07517	Canola	plastid	75.51	76.76
CDX73435	Canola	plastid	75.51	76.76
Bra007109.1-P	Field mustard	plastid	75.51	76.76
CDX78277	Canola	plastid	75.1	76.35
AT3G54890.1	Thale cress	plastid	74.69	75.93
PGSC0003DMT400059995	Potato	plastid	75.92	75.61
Solyc05g056050.2.1	Tomato	plastid	75.51	75.2
PGSC0003DMT400060313	Potato	plastid	75.51	75.2
KRH70044	Soybean	mitochondrion, nucleus, plastid	75.51	75.2
KRH08384	Soybean	nucleus, plastid	75.51	75.2
Solyc05g056070.2.1	Tomato	plastid	75.1	74.8
Zm00001d024372_P001	Maize	plastid	47.35	48.95
EER97145	Sorghum	extracellular, vacuole	28.57	40.94
KXG25214	Sorghum	plastid	38.78	37.85
KXG36552	Sorghum	plastid	37.55	34.98
EES18693	Sorghum	plastid	37.55	34.72
EES01022	Sorghum	plastid	36.73	33.96
OQU87124	Sorghum	plastid	36.33	33.71
EER99537	Sorghum	plastid	39.59	33.68
EER97143	Sorghum	plastid	35.92	33.59
EER93861	Sorghum	plastid	35.1	32.82
OQU90095	Sorghum	plastid	34.69	31.72
KXG35708	Sorghum	plastid	35.51	31.64
EES07574	Sorghum	plastid	33.88	31.2
KXG20345	Sorghum	plastid	33.47	30.94
EER96508	Sorghum	plastid	38.78	30.25
OQU82564	Sorghum	plastid	29.39	28.24
EES09551	Sorghum	plastid	31.43	27.3
KXG33266	Sorghum	extracellular	24.08	25.54

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	EntrezGene:8077179	UniProt:C5XW47	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlants:EES04597	ProteinID:EES04597	ProteinID:EES04597.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009416
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009637	GO:GO:0009644	GO:GO:0009645	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010114	GO:GO:0010218	GO:GO:0010287
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
GO:GO:0019904	GO:GO:0031409	InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF7
EnsemblPlantsGene:SORBI_3004G056900	SUPFAM:SSF103511	unigene:Sbi.6876	UniParc:UPI0001A855E0	RefSeq:XP_002451621.1	:

Description

hypothetical protein

Coordinates

chr4:+:4564183..4565563

Molecular Weight (calculated)

26470.7 Da

IEP (calculated)

6.670

GRAVY (calculated)

-0.118

Length

245 amino acids

Sequence
(BLAST)

001: MAMASSSGLR SCSAVGVPSL LAPSSRWSSR LPFCANATTS GRVTMSAEWM PGQPRPAHLD GSSPGDFGFD PLGLATVPEN FERFKESEVY HCRWAMLAVP
101: GILVPEALGL GNWVKAQEWA AVPGGQATYL GNPVPWGSLP TILVIEFVAI AFAEHQRTME KDPEKKKYPG GAFDPLGFSK DPAKFEEYKL KEIKNGRLAM
201: LAFVGFCVQQ SAYPGTGPLE NLATHLADPW HNNIGDIIIP RSISP

Best Arabidopsis Sequence Match ( AT3G54890.1 )
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N

Arabidopsis Description

LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.