CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97145	Sorghum	extracellular, vacuole	64.5	98.83
Zm00001d021435_P001	Maize	plastid	97.71	97.71
Os01t0600900-02	Rice	plastid	92.75	93.1
EES18693	Sorghum	plastid	92.75	91.7
Os09t0346500-04	Rice	plastid	91.98	90.94
EES01022	Sorghum	plastid	91.6	90.57
TraesCS5A01G454400.1	Wheat	mitochondrion, plastid	57.63	90.42
OQU87124	Sorghum	plastid	90.84	90.15
KRH08672	Soybean	mitochondrion, nucleus, plastid	89.69	89.02
KRH08669	Soybean	nucleus, plastid	89.31	88.64
KRH08676	Soybean	nucleus, plastid	89.31	88.64
KRH42317	Soybean	mitochondrion, nucleus, plastid	87.79	87.45
KRH58441	Soybean	mitochondrion, plastid	87.4	87.07
KRH70280	Soybean	plastid	73.28	77.11
EER93861	Sorghum	plastid	76.72	76.72
OQU90095	Sorghum	plastid	69.08	67.54
KXG33266	Sorghum	extracellular	49.62	56.28
EES09551	Sorghum	plastid	46.56	43.26
EER96508	Sorghum	plastid	43.13	35.99
EES04597	Sorghum	plastid	33.59	35.92
KXG36552	Sorghum	plastid	35.5	35.36
EES07574	Sorghum	plastid	34.35	33.83
KXG20345	Sorghum	plastid	33.97	33.58
KXG35708	Sorghum	plastid	33.97	32.36
EER99537	Sorghum	plastid	34.73	31.6
KXG25214	Sorghum	plastid	29.39	30.68
OQU82564	Sorghum	plastid	25.95	26.67

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:8077219	UniProt:C5X7M3	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlants:EER97143	ProteinID:EER97143	ProteinID:EER97143.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768
GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	EnsemblPlantsGene:SORBI_3002G288300	SUPFAM:SSF103511	unigene:Sbi.17770	UniParc:UPI0001A83A70
RefSeq:XP_002460622.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:66709671..66711061

Molecular Weight (calculated)

27799.2 Da

IEP (calculated)

4.904

GRAVY (calculated)

0.042

Length

262 amino acids

Sequence
(BLAST)

001: MAASTMSISS TAMAGTPIKV GSFGEGRITM RKTAAKPKVA ASGSPWYGPD RVKYLGPFSG EPPSYLTGEF PGDYGWDTAG LSADPETFAK NRELEVIHSR
101: WAMLGALGCV FPELLARNGV KFGEAVWFKA GSQIFSEGGL DYLGNPSLIH AQSILAIWAV QVVLMGAVEG YRIAGGPLGE VVDPLYPGGS FDPLGLADDP
201: EAFAELKVKE LKNGRLAMFS MFGFFVQAIV TGKGPLENLA DHLADPVNNN AWAYATNFVP GN

Best Arabidopsis Sequence Match ( AT2G34420.1 )
(BLAST)

001: MASSTMALSS PAFAGKAVKP AASDVLGSGR VTMRKTVAKP KGPSGSPWYG SDRVKYLGPF SGEPPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH
101: SRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL VHAQSILAIW ATQVILMGAV EGYRVAGDGP LGEAEDLLYP GGSFDPLGLA
201: TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK

Arabidopsis Description

LHB1B2Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39141]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.