Factsheet for Os09t0346500-04

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 19089317

cytosol: 19685898
plastid: 21433289
extracellular: 23159799
plasma membrane: 27800704
extracellular: 28232208

gfp PMID: 19089317 doi

CH Goh, S Jang, S Jung, HS Kim, HG Kang, YI Park, HJ Bae, CH Lee, G An

Environmental Biotechnology and Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97145	Sorghum	extracellular, vacuole	62.64	97.08
Os01t0600900-02	Rice	plastid	94.34	95.79
EES18693	Sorghum	plastid	92.83	92.83
TraesCS5A01G454400.1	Wheat	mitochondrion, plastid	58.11	92.22
Zm00001d009589_P001	Maize	plastid	92.08	92.08
Os01t0720500-01	Rice	plastid	92.08	92.08
EER97143	Sorghum	plastid	90.94	91.98
Zm00001d039040_P001	Maize	plastid	92.08	91.73
Zm00001d021435_P001	Maize	plastid	89.43	90.46
KRH08672	Soybean	mitochondrion, nucleus, plastid	87.17	87.5
KRH08669	Soybean	nucleus, plastid	86.79	87.12
KRH08676	Soybean	nucleus, plastid	86.79	87.12
KRH42317	Soybean	mitochondrion, nucleus, plastid	85.66	86.31
KRH58441	Soybean	mitochondrion, plastid	85.28	85.93
KRH70280	Soybean	plastid	72.45	77.11
Os03t0592500-01	Rice	extracellular	76.23	76.81
Os07t0562700-01	Rice	extracellular, plastid	66.79	66.54
Os11t0242800-01	Rice	plastid	45.28	42.4
Os06t0320500-01	Rice	plastid	33.21	36.51
Os09t0296800-01	Rice	plastid	43.77	36.14
Os07t0577600-01	Rice	plastid	34.34	34.6
Os09t0439500-01	Rice	plastid	33.21	33.33
Os02t0764500-01	Rice	plastid	32.83	33.33
Os07t0558400-01	Rice	plasma membrane, plastid	35.09	32.07
Os08t0435900-01	Rice	mitochondrion	29.43	31.97
Os02t0197600-01	Rice	plastid	32.08	31.6
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	28.3	29.76

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:4346803	EMBL:AK060851	EMBL:AK104281	EMBL:AK104288
EMBL:AK104350	ProteinID:BAD28469.1	ProteinID:BAD29115.1	ProteinID:BAF24853.1	ProteinID:BAT07611.1	ProteinID:CAA32108.1
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EMBL:D00641	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768
GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	GO:GO:0046872	InterPro:IPR023329
EnsemblPlantsGene:Os09g0346500	EnsemblPlants:Os09t0346500-04	UniProt:P12330	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56
SUPFAM:SSF103511	UniParc:UPI00003CE6F9	RefSeq:XP_015611833.1	SEG:seg	:	:

Description

CHLOROPHYLL A/B BINDING PROTEIN 1RSimilar to Chlorophyll a-b binding protein, chloroplast precursor (LHCII type I CAB) (LHCP). (Os09t0346500-04)

Coordinates

chr9:+:10845779..10847012

Molecular Weight (calculated)

28015.5 Da

IEP (calculated)

4.904

GRAVY (calculated)

0.101

Length

265 amino acids

Sequence
(BLAST)

001: MAAATMALSS PVMARAAPST SSALFGEARI TMRKTAAKPK PAASSGSPWY GADRVLYLGP LSGEPPSYLT GEFPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LIHAQSILAI WAVQVVLMGA VEGYRIAGGP LGEVVDPLYP GGAFDPLGLA
201: DDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAYATN FVPGK

Best Arabidopsis Sequence Match ( AT2G34420.1 )
(BLAST)

001: MASSTMALSS PAFAGKAVKP AASDVLGSGR VTMRKTVAKP KGPSGSPWYG SDRVKYLGPF SGEPPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH
101: SRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL VHAQSILAIW ATQVILMGAV EGYRVAGDGP LGEAEDLLYP GGSFDPLGLA
201: TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK

Arabidopsis Description

LHB1B2Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39141]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.