Factsheet for Os07t0562700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plastid: 21433289
extracellular: 23159799
plasma membrane: 27800704
extracellular: 28232208

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90095	Sorghum	plastid	91.73	91.04
Zm00001d021784_P001	Maize	plastid	91.35	90.33
GSMUA_AchrUn_...	Banana	plastid	75.19	86.58
TraesCS1D01G428200.1	Wheat	plastid	87.22	86.57
TraesCS1B01G451100.1	Wheat	plastid	87.22	86.57
TraesCS2A01G204800.1	Wheat	plastid	87.22	86.57
VIT_19s0014g03660.t01	Wine grape	plastid	86.47	86.47
Solyc07g063600.2.1	Tomato	nucleus	84.59	85.88
PGSC0003DMT400049550	Potato	plastid	84.59	85.88
PGSC0003DMT400022072	Potato	plastid	85.34	85.66
Solyc12g011450.1.1	Tomato	plastid	84.96	85.28
CDY66572	Canola	cytosol, extracellular, plastid	45.49	84.62
VIT_00s0181g00180.t01	Wine grape	plastid	85.34	84.39
KRH27171	Soybean	mitochondrion, nucleus, plastid	84.96	84.33
KRH22164	Soybean	nucleus, plastid	84.59	84.27
GSMUA_Achr1P08770_001	Banana	plastid, unclear	76.32	84.23
VIT_00s0181g00200.t01	Wine grape	plastid	84.96	84.01
Bra002999.1-P	Field mustard	plastid	82.71	83.02
HORVU2Hr1G040780.7	Barley	plastid	84.59	82.72
AT5G54270.1	Thale cress	plastid	81.95	82.26
CDY14320	Canola	plastid	71.8	81.62
CDY18320	Canola	plastid	71.43	81.2
CDY52238	Canola	plastid	70.68	80.34
CDY28778	Canola	plastid	69.17	71.88
Os03t0592500-01	Rice	extracellular	70.3	71.1
Os01t0600900-02	Rice	plastid	67.29	68.58
Os01t0720500-01	Rice	plastid	67.29	67.55
Os09t0346500-04	Rice	plastid	66.54	66.79
Zm00001d006592_P001	Maize	plastid	27.44	59.35
Os11t0242800-01	Rice	plastid	43.61	40.99
Os06t0320500-01	Rice	plastid	31.95	35.27
Os07t0577600-01	Rice	plastid	33.08	33.46
Os08t0435900-01	Rice	mitochondrion	30.08	32.79
Os09t0439500-01	Rice	plastid	32.33	32.58
Os09t0296800-01	Rice	plastid	39.1	32.4
Os02t0197600-01	Rice	plastid	32.33	31.97
Os07t0558400-01	Rice	plasma membrane, plastid	34.21	31.38
Os02t0764500-01	Rice	plastid	30.08	30.65
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	27.07	28.57

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:4343604	EMBL:AK061512	EMBL:AK103926	EMBL:AK103999
EMBL:AK104224	EMBL:AK104465	EMBL:AK104495	EMBL:AK119533	EMBL:AK119545	ProteinID:BAC83393.1
ProteinID:BAF21905.1	ProteinID:BAT02147.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	ProteinID:EAZ40298.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507
GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628
GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409
InterPro:IPR023329	EMBL:KY038493	EnsemblPlantsGene:Os07g0562700	EnsemblPlants:Os07t0562700-01	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF11	UniProt:Q6ZF30	SUPFAM:SSF103511	UniParc:UPI00001BF2F1	RefSeq:XP_015646539.1	:

Description

Similar to Type III chlorophyll a/b-binding protein (Fragment). (Os07t0562700-01);Similar to Type III chlorophyll a/b-binding protein (Fragment). (Os07t0562700-02)

Coordinates

chr7:+:22487434..22488617

Molecular Weight (calculated)

28779.6 Da

IEP (calculated)

6.125

GRAVY (calculated)

0.025

Length

266 amino acids

Sequence
(BLAST)

001: MASTIMAPTS RVLAAKTPFL GHPRPSNAPV RDIAAAATGR ITMSKELWYG PDRVKYLGPF SAQTPSYLRG EFPGDYGWDT AGLSADPEAF ARNRALEVIH
101: GRWAMLGALG CITPEVLEKW VRVDFKEPVW FKAGAQIFSD GGLDYLGNPN LVHAQSILAV LGFQVVLMGL VEGYRINGLP GVGDGNDLYP GGQYFDPLGL
201: ADDPVTFAEL KVKEIKNGRL AMFSMFGFFV QAIVTGKGPL ENLLDHLADP VANNAWVYAT KFTPGS

Best Arabidopsis Sequence Match ( AT5G54270.1 )
(BLAST)

001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA

Arabidopsis Description

LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.